|
|
(4 intermediate revisions not shown.) |
Line 1: |
Line 1: |
| + | |
| ==Phylloseptin-2== | | ==Phylloseptin-2== |
- | <StructureSection load='2jpy' size='340' side='right' caption='[[2jpy]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''> | + | <StructureSection load='2jpy' size='340' side='right'caption='[[2jpy]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2jpy]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2jpy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pithecopus_hypochondrialis Pithecopus hypochondrialis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JPY FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jq0|2jq0]], [[2jq1|2jq1]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpy OCA], [http://pdbe.org/2jpy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jpy RCSB], [http://www.ebi.ac.uk/pdbsum/2jpy PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpy OCA], [https://pdbe.org/2jpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jpy RCSB], [https://www.ebi.ac.uk/pdbsum/2jpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpy ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/PHYL2_PHYHY PHYL2_PHYHY]] Has antimicrobial activity. No hemolytic activity.[UniProtKB:P84566]<ref>PMID:15752569</ref> | + | [https://www.uniprot.org/uniprot/PLS2_PITHY PLS2_PITHY] Has antimicrobial activity. No hemolytic activity.[UniProtKB:P84566]<ref>PMID:15752569</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 22: |
Line 23: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Almeida, F C.L]] | + | [[Category: Large Structures]] |
- | [[Category: Bechinger, B]] | + | [[Category: Pithecopus hypochondrialis]] |
- | [[Category: Bemquerer, M P]] | + | [[Category: Almeida FCL]] |
- | [[Category: Cesar, A]] | + | [[Category: Bechinger B]] |
- | [[Category: Moraes, C Mendonca]] | + | [[Category: Bemquerer MP]] |
- | [[Category: Pilo-Veloso, D]] | + | [[Category: Cesar A]] |
- | [[Category: Prates, M V]] | + | [[Category: Mendonca Moraes C]] |
- | [[Category: Resende, J M]] | + | [[Category: Pilo-Veloso D]] |
- | [[Category: Valente, A]] | + | [[Category: Prates MV]] |
- | [[Category: Alpha helix]]
| + | [[Category: Resende JM]] |
- | [[Category: Amphipathic character]]
| + | [[Category: Valente A]] |
- | [[Category: Antimicrobial protein]]
| + | |
- | [[Category: C-terminal carboxyamidation]]
| + | |
| Structural highlights
Function
PLS2_PITHY Has antimicrobial activity. No hemolytic activity.[UniProtKB:P84566][1]
Publication Abstract from PubMed
Phylloseptins are antimicrobial peptides of 19-20 residues which are found in the skin secretions of the Phyllomedusa frogs that inhabit the tropical forests of South and Central Americas. The peptide sequences of PS-1, -2, and -3 carry an amidated C-terminus and they exhibit 74% sequence homology with major variations of only four residues close to the C-terminus. Here we investigated and compared the structures of the three phylloseptins in detail by CD- and two-dimensional NMR spectroscopies in the presence of phospholipid vesicles or in membrane-mimetic environments. Both CD and NMR spectroscopies reveal a high degree of helicity in the order PS-2>/=PS-1>PS-3, where the differences accumulate at the C-terminus. The conformational variations can be explained by taking into consideration electrostatic interactions of the negative ends of the helix dipoles with potentially cationic residues at positions 17 and 18. Whereas two are present in the sequence of PS-1 and -2 only one is present in PS-3. In conclusion, the antimicrobial phylloseptin peptides adopt alpha-helical conformations in membrane environments which are stabilized by electrostatic interactions of the helix dipole as well as other contributions such hydrophobic and capping interactions.
Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: The role of charges and hydrogen bonding interactions in stabilizing helix conformations.,Resende JM, Moraes CM, Prates MV, Cesar A, Almeida FC, Mundim NC, Valente AP, Bemquerer MP, Pilo-Veloso D, Bechinger B Peptides. 2008 Oct;29(10):1633-44. Epub 2008 Jul 4. PMID:18656510[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Leite JR, Silva LP, Rodrigues MI, Prates MV, Brand GD, Lacava BM, Azevedo RB, Bocca AL, Albuquerque S, Bloch C Jr. Phylloseptins: a novel class of anti-bacterial and anti-protozoan peptides from the Phyllomedusa genus. Peptides. 2005 Apr;26(4):565-73. Epub 2004 Dec 25. PMID:15752569 doi:http://dx.doi.org/S0196-9781(04)00488-7
- ↑ Resende JM, Moraes CM, Prates MV, Cesar A, Almeida FC, Mundim NC, Valente AP, Bemquerer MP, Pilo-Veloso D, Bechinger B. Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: The role of charges and hydrogen bonding interactions in stabilizing helix conformations. Peptides. 2008 Oct;29(10):1633-44. Epub 2008 Jul 4. PMID:18656510 doi:http://dx.doi.org/S0196-9781(08)00268-4
|