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| | ==1H NMR SOLUTION STRUCTURE OF CYCLOVIOLACIN O1== | | ==1H NMR SOLUTION STRUCTURE OF CYCLOVIOLACIN O1== |
| - | <StructureSection load='1df6' size='340' side='right' caption='[[1df6]], [[NMR_Ensembles_of_Models | 16 NMR models]]' scene=''> | + | <StructureSection load='1df6' size='340' side='right'caption='[[1df6]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1df6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Viola_odorata Viola odorata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DF6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DF6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1df6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Viola_odorata Viola odorata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DF6 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1df6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1df6 OCA], [http://pdbe.org/1df6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1df6 RCSB], [http://www.ebi.ac.uk/pdbsum/1df6 PDBsum]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1df6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1df6 OCA], [https://pdbe.org/1df6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1df6 RCSB], [https://www.ebi.ac.uk/pdbsum/1df6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1df6 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/CYO1_VIOOD CYO1_VIOOD]] Probably participates in a plant defense mechanism. | + | [https://www.uniprot.org/uniprot/CYO1_VIOOD CYO1_VIOOD] Probably participates in a plant defense mechanism. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | + | [[Category: Large Structures]] |
| | [[Category: Viola odorata]] | | [[Category: Viola odorata]] |
| - | [[Category: Bond, T]] | + | [[Category: Bond T]] |
| - | [[Category: Craik, D J]] | + | [[Category: Craik DJ]] |
| - | [[Category: Daly, N L]] | + | [[Category: Daly NL]] |
| - | [[Category: Waine, C]] | + | [[Category: Waine C]] |
| - | [[Category: 3-10 helix]]
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| - | [[Category: Backbone cyclic]]
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| - | [[Category: Cyclic cystine knot]]
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| - | [[Category: Double-stranded anti- parallel beta-sheet]]
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| - | [[Category: Hairpin bend]]
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| - | [[Category: Loop]]
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| - | [[Category: Plant protein]]
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| Structural highlights
Function
CYO1_VIOOD Probably participates in a plant defense mechanism.
Publication Abstract from PubMed
Several macrocyclic peptides ( approximately 30 amino acids), with diverse biological activities, have been isolated from the Rubiaceae and Violaceae plant families over recent years. We have significantly expanded the range of known macrocyclic peptides with the discovery of 16 novel peptides from extracts of Viola hederaceae, Viola odorata and Oldenlandia affinis. The Viola plants had not previously been examined for these peptides and thus represent novel species in which these unusual macrocyclic peptides are produced. Further, we have determined the three-dimensional structure of one of these novel peptides, cycloviolacin O1, using (1)H NMR spectroscopy. The structure consists of a distorted triple-stranded beta-sheet and a cystine-knot arrangement of the disulfide bonds. This structure is similar to kalata B1 and circulin A, the only two macrocyclic peptides for which a structure was available, suggesting that despite the sequence variation throughout the peptides they form a family in which the overall fold is conserved. We refer to these peptides as the cyclotide family and their embedded topology as the cyclic cystine knot (CCK) motif. The unique cyclic and knotted nature of these molecules makes them a fascinating example of topologically complex proteins. Examination of the sequences reveals they can be separated into two subfamilies, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularization of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip. Here we define the structural features of the two apparent subfamilies of the CCK peptides which may be significant for the likely defense related role of these peptides within plants.
Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif.,Craik DJ, Daly NL, Bond T, Waine C J Mol Biol. 1999 Dec 17;294(5):1327-36. PMID:10600388[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Craik DJ, Daly NL, Bond T, Waine C. Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif. J Mol Biol. 1999 Dec 17;294(5):1327-36. PMID:10600388 doi:http://dx.doi.org/10.1006/jmbi.1999.3383
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