This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k2n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 27 January 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state==
==Solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state==
-
<StructureSection load='2k2n' size='340' side='right' caption='[[2k2n]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2k2n' size='340' side='right'caption='[[2k2n]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2k2n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synr3 Synr3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K2N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K2N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2k2n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synr3 Synr3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K2N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K2N FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k2n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k2n OCA], [http://pdbe.org/2k2n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k2n RCSB], [http://www.ebi.ac.uk/pdbsum/2k2n PDBsum], [http://www.topsan.org/Proteins/CESG/2k2n TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k2n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k2n OCA], [https://pdbe.org/2k2n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k2n RCSB], [https://www.ebi.ac.uk/pdbsum/2k2n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k2n ProSAT], [https://www.topsan.org/Proteins/CESG/2k2n TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 11: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/2k2n_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/2k2n_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k2n ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 31: Line 32:
</StructureSection>
</StructureSection>
[[Category: Histidine kinase]]
[[Category: Histidine kinase]]
 +
[[Category: Large Structures]]
[[Category: Synr3]]
[[Category: Synr3]]
[[Category: Cornilescu, C C]]
[[Category: Cornilescu, C C]]

Current revision

Solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state

PDB ID 2k2n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2k2n"
Personal tools