1np7
From Proteopedia
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==Crystal Structure Analysis of Synechocystis sp. PCC6803 cryptochrome== | ==Crystal Structure Analysis of Synechocystis sp. PCC6803 cryptochrome== | ||
| - | <StructureSection load='1np7' size='340' side='right' caption='[[1np7]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='1np7' size='340' side='right'caption='[[1np7]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1np7]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1np7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NP7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1np7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1np7 OCA], [https://pdbe.org/1np7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1np7 RCSB], [https://www.ebi.ac.uk/pdbsum/1np7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1np7 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/CRYD_SYNY3 CRYD_SYNY3] May have a photoreceptor function. Binds DNA; represses transcription of at least 8 genes, including slr0364 and slr1866. Does not encode a DNA photolyase function. Its disruption does not affect circadian rhythm. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/1np7_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/1np7_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1np7 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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</div> | </div> | ||
<div class="pdbe-citations 1np7" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 1np7" style="background-color:#fffaf0;"></div> | ||
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| + | ==See Also== | ||
| + | *[[Cryptochrome 3D structures|Cryptochrome 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Brudler | + | [[Category: Large Structures]] |
| - | [[Category: Daiyasu | + | [[Category: Synechocystis sp. PCC 6803]] |
| - | [[Category: Getzoff | + | [[Category: Brudler R]] |
| - | [[Category: Hitomi | + | [[Category: Daiyasu H]] |
| - | [[Category: Ishiura | + | [[Category: Getzoff ED]] |
| - | [[Category: Kanehisa | + | [[Category: Hitomi K]] |
| - | [[Category: Kucho | + | [[Category: Ishiura M]] |
| - | [[Category: Roberts | + | [[Category: Kanehisa M]] |
| - | [[Category: Tainer | + | [[Category: Kucho K]] |
| - | [[Category: Todo | + | [[Category: Roberts VA]] |
| - | [[Category: Toh | + | [[Category: Tainer JA]] |
| - | + | [[Category: Todo T]] | |
| - | + | [[Category: Toh H]] | |
Current revision
Crystal Structure Analysis of Synechocystis sp. PCC6803 cryptochrome
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Categories: Large Structures | Synechocystis sp. PCC 6803 | Brudler R | Daiyasu H | Getzoff ED | Hitomi K | Ishiura M | Kanehisa M | Kucho K | Roberts VA | Tainer JA | Todo T | Toh H
