This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2o16
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of a putative acetoin utilization protein (AcuB) from Vibrio cholerae== | ==Crystal structure of a putative acetoin utilization protein (AcuB) from Vibrio cholerae== | ||
| - | <StructureSection load='2o16' size='340' side='right' caption='[[2o16]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='2o16' size='340' side='right'caption='[[2o16]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2o16]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2o16]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O16 FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o16 OCA], [https://pdbe.org/2o16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o16 RCSB], [https://www.ebi.ac.uk/pdbsum/2o16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o16 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o16 TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q9KTZ3_VIBCH Q9KTZ3_VIBCH] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/2o16_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/2o16_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o16 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Vibrio cholerae]] |
| - | [[Category: | + | [[Category: Almo SC]] |
| - | [[Category: | + | [[Category: Bain KT]] |
| - | [[Category: | + | [[Category: Bonanno JB]] |
| - | [[Category: | + | [[Category: Burley SK]] |
| - | [[Category: Patskovsky | + | [[Category: Patskovsky Y]] |
| - | [[Category: Powell | + | [[Category: Powell A]] |
| - | [[Category: Rutter | + | [[Category: Rutter M]] |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Slocombe | + | [[Category: Slocombe A]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a putative acetoin utilization protein (AcuB) from Vibrio cholerae
| |||||||||||
Categories: Large Structures | Vibrio cholerae | Almo SC | Bain KT | Bonanno JB | Burley SK | Patskovsky Y | Powell A | Rutter M | Sauder JM | Slocombe A

