This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2jqp
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==NMR structure determination of Bungatoxin from Bungarus candidus (Malayan Krait)== | ==NMR structure determination of Bungatoxin from Bungarus candidus (Malayan Krait)== | ||
| - | <StructureSection load='2jqp' size='340' side='right' caption='[[2jqp | + | <StructureSection load='2jqp' size='340' side='right'caption='[[2jqp]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2jqp]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2jqp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bungarus_candidus Bungarus candidus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JQP FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jqp OCA], [https://pdbe.org/2jqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jqp RCSB], [https://www.ebi.ac.uk/pdbsum/2jqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jqp ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/3NO21_BUNCA 3NO21_BUNCA] Binds with low affinity to muscular (alpha-1-beta-1-epsilon-delta/CHRNA1-CHRNB1-CHRNE-CHRND) and very low affinity to neuronal (alpha7) nicotinic acetylcholine receptor (nAChR).[UniProtKB:O42255] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jq/2jqp_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jq/2jqp_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jqp ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bungarus candidus]] | [[Category: Bungarus candidus]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Jois SD]] |
| - | [[Category: | + | [[Category: Kini RM]] |
| - | [[Category: Ramos | + | [[Category: Ramos AT]] |
| - | [[Category: Troncone | + | [[Category: Troncone LRP]] |
| - | [[Category: Ujikawa | + | [[Category: Ujikawa GY]] |
| - | [[Category: Vivekanandan | + | [[Category: Vivekanandan S]] |
| - | [[Category: | + | [[Category: De Magalhaes L]] |
| - | + | ||
Current revision
NMR structure determination of Bungatoxin from Bungarus candidus (Malayan Krait)
| |||||||||||
