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2qy6
From Proteopedia
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==Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7== | ==Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7== | ||
| - | <StructureSection load='2qy6' size='340' side='right' caption='[[2qy6]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='2qy6' size='340' side='right'caption='[[2qy6]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2qy6]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2qy6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QY6 FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qy6 OCA], [https://pdbe.org/2qy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2qy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qy6 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qy6 TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/MNMC_ECO57 MNMC_ECO57] Catalyzes the last two steps in the biosynthesis of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34.[HAMAP-Rule:MF_01102] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qy6_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qy6_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qy6 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Escherichia coli O157:H7]] |
| - | [[Category: Almo | + | [[Category: Large Structures]] |
| - | [[Category: Bain | + | [[Category: Almo SC]] |
| - | [[Category: Bonanno | + | [[Category: Bain KT]] |
| - | [[Category: Burley | + | [[Category: Bonanno JB]] |
| - | [[Category: Dickey | + | [[Category: Burley SK]] |
| - | [[Category: Eberle | + | [[Category: Dickey M]] |
| - | + | [[Category: Eberle M]] | |
| - | [[Category: Ozyurt | + | [[Category: Ozyurt S]] |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Smith | + | [[Category: Smith D]] |
| - | [[Category: Wasserman | + | [[Category: Wasserman S]] |
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Current revision
Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7
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Categories: Escherichia coli O157:H7 | Large Structures | Almo SC | Bain KT | Bonanno JB | Burley SK | Dickey M | Eberle M | Ozyurt S | Sauder JM | Smith D | Wasserman S
