This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ng5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:53, 22 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==2.0 A crystal structure of Staphylococcus aureus Sortase B==
==2.0 A crystal structure of Staphylococcus aureus Sortase B==
-
<StructureSection load='1ng5' size='340' side='right' caption='[[1ng5]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1ng5' size='340' side='right'caption='[[1ng5]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1ng5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staan Staan]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NG5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NG5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1ng5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NG5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NG5 FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SA0982 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158879 STAAN])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ng5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ng5 OCA], [http://pdbe.org/1ng5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ng5 RCSB], [http://www.ebi.ac.uk/pdbsum/1ng5 PDBsum], [http://www.topsan.org/Proteins/MCSG/1ng5 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ng5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ng5 OCA], [https://pdbe.org/1ng5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ng5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ng5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ng5 ProSAT], [https://www.topsan.org/Proteins/MCSG/1ng5 TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0H3JPP1_STAAN A0A0H3JPP1_STAAN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ng/1ng5_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ng/1ng5_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ng5 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 29: Line 32:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Staan]]
+
[[Category: Large Structures]]
-
[[Category: Joachimiak, A]]
+
[[Category: Staphylococcus aureus subsp. aureus N315]]
-
[[Category: Joachimiak, G]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Joachimiak G]]
-
[[Category: Zhang, R]]
+
[[Category: Zhang R]]
-
[[Category: A new fold]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Mcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transferase]]
+

Current revision

2.0 A crystal structure of Staphylococcus aureus Sortase B

PDB ID 1ng5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ng5"
Personal tools