1p3e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:11, 30 October 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of Glu endopeptidase in complex with MPD==
==Structure of Glu endopeptidase in complex with MPD==
-
<StructureSection load='1p3e' size='340' side='right' caption='[[1p3e]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
+
<StructureSection load='1p3e' size='340' side='right'caption='[[1p3e]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1p3e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_intermedius Bacillus intermedius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P3E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1P3E FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1p3e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_intermedius Bacillus intermedius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P3E FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1p3c|1p3c]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p3e OCA], [http://pdbe.org/1p3e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1p3e RCSB], [http://www.ebi.ac.uk/pdbsum/1p3e PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p3e OCA], [https://pdbe.org/1p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p3e RCSB], [https://www.ebi.ac.uk/pdbsum/1p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p3e ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9EXR9_BACIN Q9EXR9_BACIN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/1p3e_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/1p3e_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p3e ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 31: Line 34:
</StructureSection>
</StructureSection>
[[Category: Bacillus intermedius]]
[[Category: Bacillus intermedius]]
-
[[Category: Akimkina, T V]]
+
[[Category: Large Structures]]
-
[[Category: Blagova, E V]]
+
[[Category: Akimkina TV]]
-
[[Category: Chestukhina, G G]]
+
[[Category: Blagova EV]]
-
[[Category: Kostrov, S V]]
+
[[Category: Chestukhina GG]]
-
[[Category: Kuranova, I P]]
+
[[Category: Kostrov SV]]
-
[[Category: Lamzin, V S]]
+
[[Category: Kuranova IP]]
-
[[Category: Levdikov, V M]]
+
[[Category: Lamzin VS]]
-
[[Category: Meijers, R]]
+
[[Category: Levdikov VM]]
-
[[Category: Rudenskaya, G N]]
+
[[Category: Meijers R]]
-
[[Category: Glu specific]]
+
[[Category: Rudenskaya GN]]
-
[[Category: Hydrolase]]
+
-
[[Category: Serine protease]]
+

Current revision

Structure of Glu endopeptidase in complex with MPD

PDB ID 1p3e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools