1rdu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:22, 1 May 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1rdu.jpg|left|200px]]
 
-
{{Structure
+
==NMR STRUCTURE OF A PUTATIVE NIFB PROTEIN FROM THERMOTOGA (TM1290), WHICH BELONGS TO THE DUF35 FAMILY==
-
|PDB= 1rdu |SIZE=350|CAPTION= <scene name='initialview01'>1rdu</scene>
+
<StructureSection load='1rdu' size='340' side='right'caption='[[1rdu]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1rdu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RDU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RDU FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= tm1290 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rdu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rdu OCA], [https://pdbe.org/1rdu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rdu RCSB], [https://www.ebi.ac.uk/pdbsum/1rdu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rdu ProSAT], [https://www.topsan.org/Proteins/JCSG/1rdu TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00851 MTH1175]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rdu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rdu OCA], [http://www.ebi.ac.uk/pdbsum/1rdu PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1rdu RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9X116_THEMA Q9X116_THEMA]
-
 
+
== Evolutionary Conservation ==
-
'''NMR structure of a protein of unknown function from DUF35 family (TM1290) from Thermotoga maritima using automated NOESY analysis.'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/1rdu_consurf.spt"</scriptWhenChecked>
-
1RDU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RDU OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis., Etezady-Esfarjani T, Herrmann T, Peti W, Klock HE, Lesley SA, Wuthrich K, J Biomol NMR. 2004 Jul;29(3):403-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15213441 15213441]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rdu ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Etezady-Esfarjani, T.]]
+
[[Category: Etezady-Esfarjani T]]
-
[[Category: Herrmann, T.]]
+
[[Category: Herrmann T]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[[Category: Klock HE]]
-
[[Category: Klock, H E.]]
+
[[Category: Lesley SA]]
-
[[Category: Lesley, S A.]]
+
[[Category: Peti W]]
-
[[Category: Peti, W.]]
+
[[Category: Wuthrich K]]
-
[[Category: Wuthrich, K.]]
+
-
[[Category: atno]]
+
-
[[Category: candid]]
+
-
[[Category: hypothetical protein]]
+
-
[[Category: joint center for structural genomics (jcsg)]]
+
-
[[Category: nmr structure determination]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural proteomic]]
+
-
[[Category: thermotoga maritima]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:25:38 2008''
+

Current revision

NMR STRUCTURE OF A PUTATIVE NIFB PROTEIN FROM THERMOTOGA (TM1290), WHICH BELONGS TO THE DUF35 FAMILY

PDB ID 1rdu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools