This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vl7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:53, 20 September 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vl7.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a putative heme oxygenase (alr5027) from nostoc sp. pcc 7120 at 1.50 A resolution==
-
|PDB= 1vl7 |SIZE=350|CAPTION= <scene name='initialview01'>1vl7</scene>, resolution 1.50&Aring;
+
<StructureSection load='1vl7' size='340' side='right'caption='[[1vl7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
+
<table><tr><td colspan='2'>[[1vl7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VL7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VL7 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= alr5027 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1167 Anabaena sp.])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0748 HugZ]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vl7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vl7 OCA], [https://pdbe.org/1vl7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vl7 RCSB], [https://www.ebi.ac.uk/pdbsum/1vl7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vl7 ProSAT], [https://www.topsan.org/Proteins/JCSG/1vl7 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vl7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vl7 OCA], [http://www.ebi.ac.uk/pdbsum/1vl7 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1vl7 RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8YMA7_NOSS1 Q8YMA7_NOSS1]
-
'''Crystal structure of a member of the FMN-binding split barrel superfamily with unknown function (alr5027) from Nostoc sp. at 1.50 A resolution'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
1VL7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VL7 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/1vl7_consurf.spt"</scriptWhenChecked>
-
[[Category: Anabaena sp.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: 17134165]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vl7 ConSurf].
-
[[Category: alr5027]]
+
<div style="clear:both"></div>
-
[[Category: hypothetical protein]]
+
__TOC__
-
[[Category: jcsg]]
+
</StructureSection>
-
[[Category: joint center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: protein structure initiative]]
+
[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:26:47 2008''
+

Current revision

Crystal structure of a putative heme oxygenase (alr5027) from nostoc sp. pcc 7120 at 1.50 A resolution

PDB ID 1vl7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools