This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vlm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 25 January 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vlm.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of SAM-dependent methyltransferase, possible histamine N-methyltransferase (TM1293) from Thermotoga maritima at 2.20 A resolution==
-
|PDB= 1vlm |SIZE=350|CAPTION= <scene name='initialview01'>1vlm</scene>, resolution 2.20&Aring;
+
<StructureSection load='1vlm' size='340' side='right'caption='[[1vlm]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[1vlm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VLM FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|GENE= TM1293 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 Thermotoga maritima MSB8])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vlm OCA], [https://pdbe.org/1vlm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vlm RCSB], [https://www.ebi.ac.uk/pdbsum/1vlm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vlm ProSAT], [https://www.topsan.org/Proteins/JCSG/1vlm TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08241 Methyltransf_11]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vlm OCA], [http://www.ebi.ac.uk/pdbsum/1vlm PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1vlm RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9X119_THEMA Q9X119_THEMA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/1vlm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vlm ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of SAM-dependent methyltransferase, possible histamine N-methyltransferase (TM1293) from Thermotoga maritima at 2.20 A resolution'''
+
==See Also==
-
 
+
*[[SAM-dependent methyltrasferase 3D structures|SAM-dependent methyltrasferase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1VLM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VLM OCA].
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Thermotoga maritima msb8]]
+
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
-
[[Category: jcsg]]
+
-
[[Category: joint center for structural genomic]]
+
-
[[Category: possible histamine n-methyltransferase]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: sam-dependent methyltransferase]]
+
-
[[Category: structural genomic]]
+
-
[[Category: tm1293]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:26:58 2008''
+

Current revision

Crystal structure of SAM-dependent methyltransferase, possible histamine N-methyltransferase (TM1293) from Thermotoga maritima at 2.20 A resolution

PDB ID 1vlm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools