This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y6j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:53, 23 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135==
==L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135==
-
<StructureSection load='1y6j' size='340' side='right' caption='[[1y6j]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
+
<StructureSection load='1y6j' size='340' side='right'caption='[[1y6j]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1y6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y6J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1y6j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y6J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y6J FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cth-1135 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 ATCC 27405])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.01&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-lactate_dehydrogenase L-lactate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.27 1.1.1.27] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y6j OCA], [https://pdbe.org/1y6j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y6j RCSB], [https://www.ebi.ac.uk/pdbsum/1y6j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y6j ProSAT], [https://www.topsan.org/Proteins/SECSG/1y6j TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y6j OCA], [http://pdbe.org/1y6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y6j RCSB], [http://www.ebi.ac.uk/pdbsum/1y6j PDBsum], [http://www.topsan.org/Proteins/SECSG/1y6j TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A3DCA4_ACET2 A3DCA4_ACET2] Catalyzes the conversion of lactate to pyruvate.[HAMAP-Rule:MF_00488]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y6/1y6j_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y6/1y6j_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y6j ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Lactate Dehydrogenase|Lactate Dehydrogenase]]
+
*[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 27405]]
+
[[Category: Acetivibrio thermocellus]]
-
[[Category: L-lactate dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: Chen, L]]
+
[[Category: Chen L]]
-
[[Category: Chen, L R]]
+
[[Category: Chen LR]]
-
[[Category: Habel, J]]
+
[[Category: Habel J]]
-
[[Category: Kataeva, I]]
+
[[Category: Kataeva I]]
-
[[Category: Lee, D]]
+
[[Category: Lee D]]
-
[[Category: Lin, D]]
+
[[Category: Lin D]]
-
[[Category: Liu, Z J]]
+
[[Category: Liu Z-J]]
-
[[Category: Ljungdahl, L]]
+
[[Category: Ljungdahl L]]
-
[[Category: Rose, J]]
+
[[Category: Rose J]]
-
[[Category: Structural genomic]]
+
[[Category: Tempel W]]
-
[[Category: Tempel, W]]
+
[[Category: Wang B-C]]
-
[[Category: Wang, B C]]
+
[[Category: Yang H]]
-
[[Category: Yang, H]]
+
[[Category: Zhou W]]
-
[[Category: Zhou, W]]
+
-
[[Category: Clostridium thermocellum]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Secsg]]
+

Current revision

L-Lactate Dehydrogenase from Clostridium Thermocellum Cth-1135

PDB ID 1y6j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools