This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qj8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:50, 25 January 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qj8.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of an aspartoacylase family protein (mlr6093) from mesorhizobium loti maff303099 at 2.00 A resolution==
-
|PDB= 2qj8 |SIZE=350|CAPTION= <scene name='initialview01'>2qj8</scene>, resolution 2.000&Aring;
+
<StructureSection load='2qj8' size='340' side='right'caption='[[2qj8]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2qj8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_japonicum_MAFF_303099 Mesorhizobium japonicum MAFF 303099]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QJ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QJ8 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= NP_106651.1, mlr6093 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=381 Mesorhizobium loti])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qj8 OCA], [https://pdbe.org/2qj8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qj8 RCSB], [https://www.ebi.ac.uk/pdbsum/2qj8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qj8 ProSAT], [https://www.topsan.org/Proteins/JCSG/2qj8 TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3608 COG3608], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam04952 AstE_AspA]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qj8 OCA], [http://www.ebi.ac.uk/pdbsum/2qj8 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2qj8 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q98AA0_RHILO Q98AA0_RHILO]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of uncharacterized protein mlr6093 (NP_106651.1) from Mesorhizobium loti at 2.00 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qj/2qj8_consurf.spt"</scriptWhenChecked>
-
2QJ8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QJ8 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Mesorhizobium loti]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qj8 ConSurf].
-
[[Category: jcsg]]
+
<div style="clear:both"></div>
-
[[Category: joint center for structural genomic]]
+
__TOC__
-
[[Category: np_106651 1]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi-2]]
+
[[Category: Mesorhizobium japonicum MAFF 303099]]
-
[[Category: structural genomic]]
+
-
[[Category: uncharacterized protein mlr6093]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:34:43 2008''
+

Current revision

Crystal structure of an aspartoacylase family protein (mlr6093) from mesorhizobium loti maff303099 at 2.00 A resolution

PDB ID 2qj8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qj8"
Personal tools