1cfz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:26, 27 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==HYDROGENASE MATURATING ENDOPEPTIDASE HYBD FROM E. COLI==
==HYDROGENASE MATURATING ENDOPEPTIDASE HYBD FROM E. COLI==
-
<StructureSection load='1cfz' size='340' side='right' caption='[[1cfz]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='1cfz' size='340' side='right'caption='[[1cfz]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1cfz]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CFZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CFZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1cfz]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CFZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CFZ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cfz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cfz OCA], [http://pdbe.org/1cfz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cfz RCSB], [http://www.ebi.ac.uk/pdbsum/1cfz PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cfz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cfz OCA], [https://pdbe.org/1cfz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cfz RCSB], [https://www.ebi.ac.uk/pdbsum/1cfz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cfz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HYBD_ECOLI HYBD_ECOLI]] Protease involved in the C-terminal processing of HybC, the large subunit of hydrogenase 2. Specifically cleaves off a 15 amino acid peptide from the C-terminus of the precursor of HybC.
+
[https://www.uniprot.org/uniprot/HYBD_ECOLI HYBD_ECOLI] Protease involved in the C-terminal processing of HybC, the large subunit of hydrogenase 2. Specifically cleaves off a 15 amino acid peptide from the C-terminus of the precursor of HybC.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/1cfz_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/1cfz_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cfz ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Beisel, H G]]
+
[[Category: Large Structures]]
-
[[Category: Boeck, A]]
+
[[Category: Beisel H-G]]
-
[[Category: Fritsche, E]]
+
[[Category: Boeck A]]
-
[[Category: Huber, R]]
+
[[Category: Fritsche E]]
-
[[Category: Paschos, A]]
+
[[Category: Huber R]]
-
[[Category: Hydrogenase]]
+
[[Category: Paschos A]]
-
[[Category: Maturation]]
+
-
[[Category: Metzincin]]
+
-
[[Category: Nickel]]
+
-
[[Category: Protease]]
+

Current revision

HYDROGENASE MATURATING ENDOPEPTIDASE HYBD FROM E. COLI

PDB ID 1cfz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1cfz"
Personal tools