This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1m94

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:32, 10 April 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1m94.gif|left|200px]]
 
-
{{Structure
+
==Solution Structure of the Yeast Ubiquitin-Like Modifier Protein Hub1==
-
|PDB= 1m94 |SIZE=350|CAPTION= <scene name='initialview01'>1m94</scene>
+
<StructureSection load='1m94' size='340' side='right'caption='[[1m94]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1m94]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M94 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M94 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= YNR032c-a/HUB1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m94 OCA], [https://pdbe.org/1m94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m94 RCSB], [https://www.ebi.ac.uk/pdbsum/1m94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m94 ProSAT], [https://www.topsan.org/Proteins/NESGC/1m94 TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01791 Ubl5]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m94 OCA], [http://www.ebi.ac.uk/pdbsum/1m94 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1m94 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/HUB1_YEAST HUB1_YEAST] Forms conjugate with SPH1 and HBT1. Involved in morphogenesis.
-
 
+
== Evolutionary Conservation ==
-
'''Solution Structure of the Yeast Ubiquitin-Like Modifier Protein Hub1'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/1m94_consurf.spt"</scriptWhenChecked>
-
1M94 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M94 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
Solution structure of the yeast ubiquitin-like modifier protein Hub1., Ramelot TA, Cort JR, Yee AA, Semesi A, Edwards AM, Arrowsmith CH, Kennedy MA, J Struct Funct Genomics. 2003;4(1):25-30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12943364 12943364]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m94 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Cort JR]]
-
[[Category: Cort, J R.]]
+
[[Category: Edwards AM]]
-
[[Category: Edwards, A M.]]
+
[[Category: Kennedy MA]]
-
[[Category: Kennedy, M A.]]
+
[[Category: Ramelot TA]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Semesi A]]
-
[[Category: Ramelot, T A.]]
+
[[Category: Yee AA]]
-
[[Category: Semesi, A.]]
+
-
[[Category: Yee, A A.]]
+
-
[[Category: nesg]]
+
-
[[Category: northeast structural genomics consortium]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: ubiquitin-like fold or beta-grasp fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 05:56:49 2008''
+

Current revision

Solution Structure of the Yeast Ubiquitin-Like Modifier Protein Hub1

PDB ID 1m94

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools