2pos

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:19, 21 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of sylvaticin, a new secreted protein from pythium sylvaticum==
==Crystal Structure of sylvaticin, a new secreted protein from pythium sylvaticum==
-
<StructureSection load='2pos' size='340' side='right' caption='[[2pos]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='2pos' size='340' side='right'caption='[[2pos]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2pos]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pythium_sylvaticum Pythium sylvaticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2POS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2POS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2pos]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Globisporangium_sylvaticum Globisporangium sylvaticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2POS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2POS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pos FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pos OCA], [http://pdbe.org/2pos PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pos RCSB], [http://www.ebi.ac.uk/pdbsum/2pos PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pos FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pos OCA], [https://pdbe.org/2pos PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pos RCSB], [https://www.ebi.ac.uk/pdbsum/2pos PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pos ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D0VWX7_9STRA D0VWX7_9STRA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/po/2pos_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/po/2pos_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pos ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 29: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pythium sylvaticum]]
+
[[Category: Globisporangium sylvaticum]]
-
[[Category: Lascombe, M B]]
+
[[Category: Large Structures]]
-
[[Category: Prange, T]]
+
[[Category: Lascombe MB]]
-
[[Category: Elicitin]]
+
[[Category: Prange T]]
-
[[Category: Sylvaticin]]
+
-
[[Category: Toxin]]
+

Current revision

Crystal Structure of sylvaticin, a new secreted protein from pythium sylvaticum

PDB ID 2pos

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pos"
Personal tools