2d9s
From Proteopedia
(Difference between revisions)
(2 intermediate revisions not shown.) | |||
Line 1: | Line 1: | ||
+ | |||
==Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA== | ==Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA== | ||
- | <StructureSection load='2d9s' size='340' side='right' caption='[[2d9s | + | <StructureSection load='2d9s' size='340' side='right'caption='[[2d9s]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2d9s]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2d9s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D9S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D9S FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d9s OCA], [https://pdbe.org/2d9s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d9s RCSB], [https://www.ebi.ac.uk/pdbsum/2d9s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d9s ProSAT], [https://www.topsan.org/Proteins/RSGI/2d9s TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Disease == | == Disease == | ||
- | [ | + | [https://www.uniprot.org/uniprot/CBL_MOUSE CBL_MOUSE] Note=Can be converted to an oncogenic protein by deletions or mutations that disturb its ability to down-regulate RTKs. |
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/CBL_MOUSE CBL_MOUSE] Adapter protein that functions as a negative regulator of many signaling pathways that are triggered by activation of cell surface receptors. Acts as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by the proteasome. Recognizes activated receptor tyrosine kinases, including KIT, FLT1, FGFR1, FGFR2, PDGFRA, PDGFRB, EGFR, CSF1R, EPHA8 and KDR and terminates signaling. Recognizes membrane-bound HCK and other kinases of the SRC family and mediates their ubiquitination and degradation. Participates in signal transduction in hematopoietic cells. Plays an important role in the regulation of osteoblast differentiation and apoptosis. Essential for osteoclastic bone resorption. The Tyr-737 phosphorylated form induces the activation and recruitment of phosphatidylinositol 3-kinase to the cell membrane in a signaling pathway that is critical for osteoclast function.<ref>PMID:9653117</ref> <ref>PMID:10393178</ref> <ref>PMID:12649282</ref> <ref>PMID:19265199</ref> <ref>PMID:20100865</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d9/2d9s_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d9/2d9s_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
- | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d9s ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
- | *[[Ubiquitin protein ligase|Ubiquitin protein ligase]] | + | *[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Guntert | + | [[Category: Mus musculus]] |
- | [[Category: Hamada | + | [[Category: Guntert P]] |
- | [[Category: Hirota | + | [[Category: Hamada T]] |
- | [[Category: Izumi | + | [[Category: Hirota H]] |
- | [[Category: Kigawa | + | [[Category: Izumi K]] |
- | [[Category: Koshiba | + | [[Category: Kigawa T]] |
- | [[Category: Kurosaki | + | [[Category: Koshiba S]] |
- | [[Category: Lin | + | [[Category: Kurosaki C]] |
- | + | [[Category: Lin Y-J]] | |
- | [[Category: Yokoyama | + | [[Category: Yokoyama S]] |
- | [[Category: Yoshida | + | [[Category: Yoshida M]] |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + |
Current revision
Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA
|
Categories: Large Structures | Mus musculus | Guntert P | Hamada T | Hirota H | Izumi K | Kigawa T | Koshiba S | Kurosaki C | Lin Y-J | Yokoyama S | Yoshida M