1e4u

From Proteopedia

(Difference between revisions)

Current revision

N-terminal RING finger domain of human NOT-4

Structural highlights

1e4u is a 1 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CNOT4_HUMAN Has E3 ubiquitin ligase activity. The CCR4-NOT complex functions as general transcription regulation complex.^[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The NOT4 protein is a component of the CCR4.NOT complex, a global regulator of RNA polymerase II transcription. Human NOT4 (hNOT4) contains a RING finger motif of the C(4)C(4) type. We expressed and purified the N-terminal region of hNOT4 (residues 1-78) encompassing the RING finger motif and determined the solution structure by heteronuclear NMR. NMR experiments using a (113)Cd-substituted hNOT4 RING finger showed that two metal ions are bound through cysteine residues in a cross-brace manner. The three-dimensional structure of the hNOT4 RING finger was refined with root mean square deviation values of 0.58 +/- 0.13 A for the backbone atoms and 1.08 +/- 0.12 A for heavy atoms. The hNOT4 RING finger consists of an alpha-helix and three long loops that are stabilized by zinc coordination. The overall folding of the hNOT4 RING finger is similar to that of the C(3)HC(4) RING fingers. The relative orientation of the two zinc-chelating loops and the alpha-helix is well conserved. However, for the other regions, the secondary structural elements are distinct.

The structure of the C4C4 ring finger of human NOT4 reveals features distinct from those of C3HC4 RING fingers.,Hanzawa H, de Ruwe MJ, Albert TK, van Der Vliet PC, Timmers HT, Boelens R J Biol Chem. 2001 Mar 30;276(13):10185-90. Epub 2000 Nov 21. PMID:11087754^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Albert TK, Hanzawa H, Legtenberg YI, de Ruwe MJ, van den Heuvel FA, Collart MA, Boelens R, Timmers HT. Identification of a ubiquitin-protein ligase subunit within the CCR4-NOT transcription repressor complex. EMBO J. 2002 Feb 1;21(3):355-64. PMID:11823428 doi:http://dx.doi.org/10.1093/emboj/21.3.355
↑ Hanzawa H, de Ruwe MJ, Albert TK, van Der Vliet PC, Timmers HT, Boelens R. The structure of the C4C4 ring finger of human NOT4 reveals features distinct from those of C3HC4 RING fingers. J Biol Chem. 2001 Mar 30;276(13):10185-90. Epub 2000 Nov 21. PMID:11087754 doi:10.1074/jbc.M009298200

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1e4u"

@@ Line 1: / Line 1: @@
-==N-TERMINAL RING FINGER DOMAIN OF HUMAN NOT-4==
-<StructureSection load='1e4u' size='340' side='right' caption='[[1e4u]], [[NMR_Ensembles_of_Models | 30 NMR models]]' scene=''>
+==N-terminal RING finger domain of human NOT-4==
+<StructureSection load='1e4u' size='340' side='right'caption='[[1e4u]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1e4u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1E4U FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1e4u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E4U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E4U FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1e4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e4u OCA], [http://pdbe.org/1e4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1e4u RCSB], [http://www.ebi.ac.uk/pdbsum/1e4u PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e4u OCA], [https://pdbe.org/1e4u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e4u RCSB], [https://www.ebi.ac.uk/pdbsum/1e4u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e4u ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CNOT4_HUMAN CNOT4_HUMAN]] Has E3 ubiquitin ligase activity. The CCR4-NOT complex functions as general transcription regulation complex.<ref>PMID:11823428</ref>
+[https://www.uniprot.org/uniprot/CNOT4_HUMAN CNOT4_HUMAN] Has E3 ubiquitin ligase activity. The CCR4-NOT complex functions as general transcription regulation complex.<ref>PMID:11823428</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e4/1e4u_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e4/1e4u_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e4u ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 31: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Albert, T K]]
+[[Category: Large Structures]]
-[[Category: Boelens, R]]
+[[Category: Albert TK]]
-[[Category: Hanzawa, H]]
+[[Category: Boelens R]]
-[[Category: Ruwe, M J.De]]
+[[Category: De Ruwe MJ]]
-[[Category: Timmers, H T]]
+[[Category: Hanzawa H]]
-[[Category: Vliet, P C.Van Der]]
+[[Category: Timmers HT]]
-[[Category: Gene regulation]]
+[[Category: Van Der Vliet PC]]
-[[Category: Transcriptional control]]

1e4u

From Proteopedia

Current revision

N-terminal RING finger domain of human NOT-4

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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