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1ups

From Proteopedia

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[[Image:1ups.gif|left|200px]]
 
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{{Structure
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==GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens==
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|PDB= 1ups |SIZE=350|CAPTION= <scene name='initialview01'>1ups</scene>, resolution 1.82&Aring;
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<StructureSection load='1ups' size='340' side='right'caption='[[1ups]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Ca+Binding+Site+For+Chain+B'>AC1</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>
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<table><tr><td colspan='2'>[[1ups]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UPS FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02180 GH16_laminarinase]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ups FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ups OCA], [https://pdbe.org/1ups PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ups RCSB], [https://www.ebi.ac.uk/pdbsum/1ups PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ups ProSAT], [https://www.topsan.org/Proteins/SECSG/1ups TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ups FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ups OCA], [http://www.ebi.ac.uk/pdbsum/1ups PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1ups RCSB]</span>
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</table>
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}}
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== Function ==
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[https://www.uniprot.org/uniprot/Q934G8_CLOPF Q934G8_CLOPF]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/up/1ups_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ups ConSurf].
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<div style="clear:both"></div>
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'''GLCNAC[ALPHA]1-4GAL RELEASING ENDO-[BETA]-GALACTOSIDASE FROM CLOSTRIDIUM PERFRINGENS'''
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==See Also==
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*[[Galactosidase 3D structures|Galactosidase 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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1UPS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UPS OCA].
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==Reference==
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Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens., Tempel W, Liu ZJ, Horanyi PS, Deng L, Lee D, Newton MG, Rose JP, Ashida H, Li SC, Li YT, Wang BC, Proteins. 2005 Apr 1;59(1):141-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15688452 15688452]
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[[Category: Clostridium perfringens]]
[[Category: Clostridium perfringens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Ashida, H.]]
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[[Category: Ashida H]]
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[[Category: Deng, L.]]
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[[Category: Deng L]]
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[[Category: Horanyi, P S.]]
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[[Category: Horanyi PS]]
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[[Category: Lee, D.]]
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[[Category: Lee D]]
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[[Category: Li, S C.]]
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[[Category: Li S-C]]
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[[Category: Li, Y T.]]
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[[Category: Li Y-T]]
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[[Category: Liu, Z J.]]
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[[Category: Liu Z-J]]
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[[Category: Newton, M G.]]
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[[Category: Newton MG]]
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[[Category: Rose, J P.]]
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[[Category: Rose JP]]
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[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
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[[Category: Tempel W]]
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[[Category: Tempel, W.]]
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[[Category: Wang B-C]]
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[[Category: Wang, B C.]]
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[[Category: endo-galactosidase,clostridium perfringens,glycosyl hydrolase,psi,protein structure initiative,southeast collaboratory for structural genomics,secsg]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:09:35 2008''
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Current revision

GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens

PDB ID 1ups

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