1xj5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:37, 30 October 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xj5.jpg|left|200px]]
 
-
{{Structure
+
==X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820==
-
|PDB= 1xj5 |SIZE=350|CAPTION= <scene name='initialview01'>1xj5</scene>, resolution 2.70&Aring;
+
<StructureSection load='1xj5' size='340' side='right'caption='[[1xj5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[1xj5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XJ5 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
|GENE= AT1G23820 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01564 Spermine_synth]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj5 OCA], [https://pdbe.org/1xj5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xj5 RCSB], [https://www.ebi.ac.uk/pdbsum/1xj5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj5 ProSAT], [https://www.topsan.org/Proteins/CESG/1xj5 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj5 OCA], [http://www.ebi.ac.uk/pdbsum/1xj5 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1xj5 RCSB]</span>
+
</table>
-
}}
+
== Function ==
 +
[https://www.uniprot.org/uniprot/SPDS1_ARATH SPDS1_ARATH]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj5_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xj5 ConSurf].
 +
<div style="clear:both"></div>
-
'''X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820'''
+
==See Also==
-
 
+
*[[Spermidine synthase 3D structures|Spermidine synthase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1XJ5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ5 OCA].
+
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Spermidine synthase]]
+
[[Category: Allard STM]]
-
[[Category: Allard, S T.M.]]
+
[[Category: Bingman CA]]
-
[[Category: Bingman, C A.]]
+
[[Category: Bitto E]]
-
[[Category: Bitto, E.]]
+
[[Category: Phillips Jr GN]]
-
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+
[[Category: Smith DW]]
-
[[Category: Jr., G N.Phillips.]]
+
[[Category: Wesenberg GE]]
-
[[Category: Smith, D W.]]
+
-
[[Category: Wesenberg, G E.]]
+
-
[[Category: at1g23820]]
+
-
[[Category: center for eukaryotic structural genomic]]
+
-
[[Category: cesg]]
+
-
[[Category: polyamine]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: putrescine aminopropyl transferase]]
+
-
[[Category: spds1]]
+
-
[[Category: spermidine synthase]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:11:41 2008''
+

Current revision

X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820

PDB ID 1xj5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xj5"
Personal tools