1z6k

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[[Image:1z6k.gif|left|200px]]
 
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{{Structure
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==Citrate lyase beta subunit complexed with oxaloacetate and magnesium from M. tuberculosis==
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|PDB= 1z6k |SIZE=350|CAPTION= <scene name='initialview01'>1z6k</scene>, resolution 2.3&Aring;
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<StructureSection load='1z6k' size='340' side='right'caption='[[1z6k]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>
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<table><tr><td colspan='2'>[[1z6k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z6K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z6K FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Citrate_(pro-3S)-lyase Citrate (pro-3S)-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.6 4.1.3.6] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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|GENE= Rv2498c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2301 CitE]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z6k OCA], [https://pdbe.org/1z6k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z6k RCSB], [https://www.ebi.ac.uk/pdbsum/1z6k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z6k ProSAT], [https://www.topsan.org/Proteins/TBSGC/1z6k TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z6k OCA], [http://www.ebi.ac.uk/pdbsum/1z6k PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1z6k RCSB]</span>
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</table>
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}}
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== Function ==
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[https://www.uniprot.org/uniprot/CITEL_MYCTU CITEL_MYCTU] May play a role in fatty acid biosynthesis (Potential).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z6/1z6k_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z6k ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Fatty acid biosynthesis is essential for the survival of Mycobacterium tuberculosis and acetyl-coenzyme A (acetyl-CoA) is an essential precursor in this pathway. We have determined the 3-D crystal structure of M. tuberculosis citrate lyase beta-subunit (CitE), which as annotated should cleave protein bound citryl-CoA to oxaloacetate and a protein-bound CoA derivative. The CitE structure has the (beta/alpha)(8) TIM barrel fold with an additional alpha-helix, and is trimeric. We have determined the ternary complex bound with oxaloacetate and magnesium, revealing some of the conserved residues involved in catalysis. While the bacterial citrate lyase is a complex with three subunits, the M. tuberculosis genome does not contain the alpha and gamma subunits of this complex, implying that M. tuberculosis CitE acts differently from other bacterial CitE proteins. The analysis of gene clusters containing the CitE protein from 168 fully sequenced organisms has led us to identify a grouping of functionally related genes preserved in M. tuberculosis, Rattus norvegicus, Homo sapiens, and Mus musculus. We propose a novel enzymatic function for M. tuberculosis CitE in fatty acid biosynthesis that is analogous to bacterial citrate lyase but producing acetyl-CoA rather than a protein-bound CoA derivative.
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'''Citrate lyase beta subunit complexed with oxaloacetate and magnesium from M. tuberculosis'''
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The structure and computational analysis of Mycobacterium tuberculosis protein CitE suggest a novel enzymatic function.,Goulding CW, Bowers PM, Segelke B, Lekin T, Kim CY, Terwilliger TC, Eisenberg D J Mol Biol. 2007 Jan 12;365(2):275-83. Epub 2006 Oct 3. PMID:17064730<ref>PMID:17064730</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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1Z6K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z6K OCA].
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<div class="pdbe-citations 1z6k" style="background-color:#fffaf0;"></div>
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[[Category: Citrate (pro-3S)-lyase]]
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== References ==
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[[Category: Mycobacterium tuberculosis]]
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<references/>
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[[Category: Single protein]]
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__TOC__
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[[Category: Bowers, P.]]
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</StructureSection>
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[[Category: Eisenberg, D.]]
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[[Category: Large Structures]]
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[[Category: Goulding, C W.]]
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[[Category: Mycobacterium tuberculosis H37Rv]]
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[[Category: Kim, C Y.]]
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[[Category: Bowers PM]]
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[[Category: Lekin, T.]]
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[[Category: Eisenberg D]]
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[[Category: Segelke, B.]]
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[[Category: Goulding CW]]
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[[Category: TBSGC, TB Structural Genomics Consortium.]]
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[[Category: Kim CY]]
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[[Category: Terwilliger, T.]]
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[[Category: Lekin T]]
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[[Category: protein structure initiative]]
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[[Category: Segelke B]]
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[[Category: psi]]
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[[Category: Terwilliger TC]]
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[[Category: structural genomic]]
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[[Category: tb structural genomics consortium]]
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[[Category: tbsgc]]
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[[Category: tim barrel]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:17:22 2008''
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Current revision

Citrate lyase beta subunit complexed with oxaloacetate and magnesium from M. tuberculosis

PDB ID 1z6k

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