This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2a4k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:19, 23 August 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2a4k.gif|left|200px]]
 
-
{{Structure
+
==3-Oxoacyl-[acyl carrier protein] reductase from Thermus thermophilus TT0137==
-
|PDB= 2a4k |SIZE=350|CAPTION= <scene name='initialview01'>2a4k</scene>, resolution 2.301&Aring;
+
<StructureSection load='2a4k' size='340' side='right'caption='[[2a4k]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=UNK:UNKNOWN'>UNK</scene>
+
<table><tr><td colspan='2'>[[2a4k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A4K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A4K FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacyl-[acyl-carrier-protein]_reductase 3-oxoacyl-[acyl-carrier-protein] reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.100 1.1.1.100] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.301&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05653 fabG], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12825 fabG]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a4k OCA], [https://pdbe.org/2a4k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a4k RCSB], [https://www.ebi.ac.uk/pdbsum/2a4k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a4k ProSAT], [https://www.topsan.org/Proteins/SECSG/2a4k TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a4k OCA], [http://www.ebi.ac.uk/pdbsum/2a4k PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2a4k RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''3-Oxoacyl-[acyl carrier protein] reductase from Thermus thermophilus TT0137'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a4/2a4k_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2A4K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A4K OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: 3-oxoacyl-[acyl-carrier-protein] reductase]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a4k ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Chang, S H.]]
+
[[Category: Chang S-H]]
-
[[Category: Chen, L.]]
+
[[Category: Chen L]]
-
[[Category: Ebihara, A.]]
+
[[Category: Ebihara A]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Liu, Z J.]]
+
[[Category: Liu Z-J]]
-
[[Category: Nguyen, J.]]
+
[[Category: Nguyen J]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Rose JP]]
-
[[Category: Rose, J P.]]
+
[[Category: Tempel W]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Wang B-C]]
-
[[Category: Tempel, W.]]
+
[[Category: Yokoyama S]]
-
[[Category: Wang, B C.]]
+
[[Category: Zhou W]]
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Zhou, W.]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: reductase,hyperthermophile]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomic]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:19:34 2008''
+

Current revision

3-Oxoacyl-[acyl carrier protein] reductase from Thermus thermophilus TT0137

PDB ID 2a4k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2a4k"
Personal tools