This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2akk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:15, 9 May 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2akk.gif|left|200px]]
 
-
{{Structure
+
==Solution structure of phnA-like protein rp4479 from Rhodopseudomonas palustris==
-
|PDB= 2akk |SIZE=350|CAPTION= <scene name='initialview01'>2akk</scene>
+
<StructureSection load='2akk' size='340' side='right'caption='[[2akk]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2akk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AKK FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2akk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2akk OCA], [https://pdbe.org/2akk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2akk RCSB], [https://www.ebi.ac.uk/pdbsum/2akk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2akk ProSAT], [https://www.topsan.org/Proteins/NESGC/2akk TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03831 PhnA]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2akk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2akk OCA], [http://www.ebi.ac.uk/pdbsum/2akk PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2akk RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q6N1A7_RHOPA Q6N1A7_RHOPA]
-
 
+
== Evolutionary Conservation ==
-
'''Solution structure of phnA-like protein rp4479 from Rhodopseudomonas palustris'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/2akk_consurf.spt"</scriptWhenChecked>
-
2AKK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AKK OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Rhodopseudomonas palustris]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Arrowsmith, C H.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2akk ConSurf].
-
[[Category: Edward, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kennedy, M.]]
+
__TOC__
-
[[Category: Lemak, A.]]
+
</StructureSection>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: OCSP, Ontario Centre for Structural Proteomics.]]
+
[[Category: Rhodopseudomonas palustris CGA009]]
-
[[Category: Ramelot, T A.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Semesi, A.]]
+
[[Category: Edward A]]
-
[[Category: Wu, B.]]
+
[[Category: Kennedy M]]
-
[[Category: Yee, A.]]
+
[[Category: Lemak A]]
-
[[Category: beta-strand protein]]
+
[[Category: Ramelot TA]]
-
[[Category: nesg]]
+
[[Category: Semesi A]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Wu B]]
-
[[Category: ocsp]]
+
[[Category: Yee A]]
-
[[Category: ontario centre for structural proteomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:20:24 2008''
+

Current revision

Solution structure of phnA-like protein rp4479 from Rhodopseudomonas palustris

PDB ID 2akk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools