This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jwi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:16, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.==
==Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.==
-
<StructureSection load='1jwi' size='340' side='right' caption='[[1jwi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1jwi' size='340' side='right'caption='[[1jwi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1jwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bitis_arietans Bitis arietans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JWI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1jwi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bitis_arietans Bitis arietans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JWI FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jwi OCA], [http://pdbe.org/1jwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jwi RCSB], [http://www.ebi.ac.uk/pdbsum/1jwi PDBsum]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jwi OCA], [https://pdbe.org/1jwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jwi RCSB], [https://www.ebi.ac.uk/pdbsum/1jwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jwi ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SLA_BITAR SLA_BITAR] Snaclec that binds to von Willebrand factor (VWF) and induces its interaction with GPIbalpha (GP1BA) (via the vWF A1 domain), resulting in platelet aggregation.<ref>PMID:12069583</ref> <ref>PMID:8806626</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/1jwi_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/1jwi_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jwi ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 29: Line 33:
</StructureSection>
</StructureSection>
[[Category: Bitis arietans]]
[[Category: Bitis arietans]]
-
[[Category: Fukuda, K]]
+
[[Category: Large Structures]]
-
[[Category: Hamako, J]]
+
[[Category: Fukuda K]]
-
[[Category: Hirotsu, S]]
+
[[Category: Hamako J]]
-
[[Category: Matsui, T]]
+
[[Category: Hirotsu S]]
-
[[Category: Mizuno, H]]
+
[[Category: Matsui T]]
-
[[Category: Morita, T]]
+
[[Category: Mizuno H]]
-
[[Category: Qi, M C]]
+
[[Category: Morita T]]
-
[[Category: Titani, K]]
+
[[Category: Qi MC]]
-
[[Category: C-type lectin]]
+
[[Category: Titani K]]
-
[[Category: Domain swapping]]
+
-
[[Category: Toxin]]
+

Current revision

Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.

PDB ID 1jwi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools