This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2f6k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:53, 5 May 2021) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f6k.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24==
-
|PDB= 2f6k |SIZE=350|CAPTION= <scene name='initialview01'>2f6k</scene>, resolution 2.500&Aring;
+
<StructureSection load='2f6k' size='340' side='right'caption='[[2f6k]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2f6k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacpl Lacpl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F6K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F6K FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Aminocarboxymuconate-semialdehyde_decarboxylase Aminocarboxymuconate-semialdehyde decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.45 4.1.1.45] </span>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
|GENE=
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam04909 Amidohydro_2]</span>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aminocarboxymuconate-semialdehyde_decarboxylase Aminocarboxymuconate-semialdehyde decarboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.45 4.1.1.45] </span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f6k OCA], [http://www.ebi.ac.uk/pdbsum/2f6k PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2f6k RCSB]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f6k OCA], [https://pdbe.org/2f6k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f6k RCSB], [https://www.ebi.ac.uk/pdbsum/2f6k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f6k ProSAT], [https://www.topsan.org/Proteins/NESGC/2f6k TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f6/2f6k_consurf.spt"</scriptWhenChecked>
-
2F6K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F6K OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f6k ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Aminocarboxymuconate-semialdehyde decarboxylase]]
[[Category: Aminocarboxymuconate-semialdehyde decarboxylase]]
-
[[Category: Lactobacillus plantarum]]
+
[[Category: Lacpl]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T.]]
+
[[Category: Acton, T]]
-
[[Category: Arnold, E.]]
+
[[Category: Arnold, E]]
-
[[Category: Das, K.]]
+
[[Category: Das, K]]
-
[[Category: Ma, L.]]
+
[[Category: Ma, L]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione, G T]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Structural genomic]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao, R]]
-
[[Category: acmd]]
+
[[Category: Acm]]
-
[[Category: acm]]
+
[[Category: Acmd]]
-
[[Category: aminohydro_2]]
+
[[Category: Aminohydro_2]]
-
[[Category: metal dependent hydrolyse]]
+
[[Category: Lyase]]
-
[[Category: nesg]]
+
[[Category: Metal dependent hydrolyse]]
-
[[Category: nitrobenzoic acid biodegradation]]
+
[[Category: Nesg]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Nitrobenzoic acid biodegradation]]
-
[[Category: protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: psi]]
+
[[Category: Quin]]
-
[[Category: quin]]
+
[[Category: Quinolinic acid]]
-
[[Category: quinolinic acid]]
+
[[Category: Tryptophan-nda metabolism]]
-
[[Category: structural genomic]]
+
-
[[Category: tryptophan-nda metabolism]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:23:43 2008''
+

Current revision

Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24

PDB ID 2f6k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools