1mjh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:43, 27 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics==
==Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics==
-
<StructureSection load='1mjh' size='340' side='right' caption='[[1mjh]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='1mjh' size='340' side='right'caption='[[1mjh]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1mjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1MJH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1mjh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MJH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MJ0577 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ATCC 43067])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mjh OCA], [http://pdbe.org/1mjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1mjh RCSB], [http://www.ebi.ac.uk/pdbsum/1mjh PDBsum], [http://www.topsan.org/Proteins/BSGC/1mjh TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mjh OCA], [https://pdbe.org/1mjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mjh RCSB], [https://www.ebi.ac.uk/pdbsum/1mjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mjh ProSAT], [https://www.topsan.org/Proteins/BSGC/1mjh TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y577_METJA Y577_METJA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mj/1mjh_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mj/1mjh_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mjh ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 30: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43067]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Methanocaldococcus jannaschii]]
-
[[Category: Hung, L W]]
+
[[Category: Hung L-W]]
-
[[Category: Kim, K K]]
+
[[Category: Kim K-K]]
-
[[Category: Kim, R]]
+
[[Category: Kim R]]
-
[[Category: Kim, S H]]
+
[[Category: Kim S-H]]
-
[[Category: Mueller-Dieckmann, H J]]
+
[[Category: Mueller-Dieckmann HJ]]
-
[[Category: Yokota, H]]
+
[[Category: Yokota H]]
-
[[Category: Zarembinski, T I]]
+
[[Category: Zarembinski TI]]
-
[[Category: Atp binding protein]]
+
-
[[Category: Bsgc structure funded by nih]]
+
-
[[Category: Functional assignment]]
+
-
[[Category: Hypothetical protein]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics

PDB ID 1mjh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mjh"
Personal tools