2dji

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:27, 25 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD==
==Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD==
-
<StructureSection load='2dji' size='340' side='right' caption='[[2dji]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='2dji' size='340' side='right'caption='[[2dji]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2dji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"gaffkya_homari"_hitchner_and_snieszko_1947 "gaffkya homari" hitchner and snieszko 1947]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DJI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2dji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aerococcus_viridans Aerococcus viridans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DJI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1v5e|1v5e]], [[1v5f|1v5f]], [[1v5g|1v5g]], [[1pox|1pox]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyruvate_oxidase Pyruvate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.3.3 1.2.3.3] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dji OCA], [https://pdbe.org/2dji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dji RCSB], [https://www.ebi.ac.uk/pdbsum/2dji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dji ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dji OCA], [http://pdbe.org/2dji PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dji RCSB], [http://www.ebi.ac.uk/pdbsum/2dji PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A9X9K8_9LACT A9X9K8_9LACT]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/2dji_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/2dji_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dji ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Gaffkya homari hitchner and snieszko 1947]]
+
[[Category: Aerococcus viridans]]
-
[[Category: Pyruvate oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Hossain, M T]]
+
[[Category: Hossain MT]]
-
[[Category: Imamura, S]]
+
[[Category: Imamura S]]
-
[[Category: Juan, E C.M]]
+
[[Category: Juan ECM]]
-
[[Category: Sekiguchi, T]]
+
[[Category: Sekiguchi T]]
-
[[Category: Suzuki, K]]
+
[[Category: Suzuki K]]
-
[[Category: Takenaka, A]]
+
[[Category: Takenaka A]]
-
[[Category: Yamamoto, T]]
+
[[Category: Yamamoto T]]
-
[[Category: Flavoprotein]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal Structure of Pyruvate Oxidase from Aerococcus viridans containing FAD

PDB ID 2dji

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dji"
Personal tools