This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1oed

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 9 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES==
==STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES==
-
<StructureSection load='1oed' size='340' side='right' caption='[[1oed]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
+
<SX load='1oed' size='340' side='right' viewer='molstar' caption='[[1oed]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1oed]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Torpedo_marmorata Torpedo marmorata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OED OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OED FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1oed]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Torpedo_marmorata Torpedo marmorata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OED FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1abt|1abt]], [[1dxz|1dxz]], [[1idg|1idg]], [[1idh|1idh]], [[1lk1|1lk1]], [[1lxg|1lxg]], [[1lxh|1lxh]], [[1tor|1tor]], [[1tos|1tos]], [[3mra|3mra]], [[1eq8|1eq8]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oed OCA], [http://pdbe.org/1oed PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oed RCSB], [http://www.ebi.ac.uk/pdbsum/1oed PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oed OCA], [https://pdbe.org/1oed PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oed RCSB], [https://www.ebi.ac.uk/pdbsum/1oed PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oed ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ACHG_TORCA ACHG_TORCA]] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. [[http://www.uniprot.org/uniprot/ACHA_TORCA ACHA_TORCA]] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. [[http://www.uniprot.org/uniprot/ACHD_TORCA ACHD_TORCA]] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. [[http://www.uniprot.org/uniprot/ACHB_TORCA ACHB_TORCA]] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
+
[https://www.uniprot.org/uniprot/ACHA_TORMA ACHA_TORMA] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oe/1oed_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oe/1oed_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oed ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 29: Line 30:
==See Also==
==See Also==
-
*[[Nicotinic Acetylcholine Receptor|Nicotinic Acetylcholine Receptor]]
+
*[[Acetyl choline receptor 3D structures|Acetyl choline receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
 +
[[Category: Large Structures]]
[[Category: Torpedo marmorata]]
[[Category: Torpedo marmorata]]
-
[[Category: Fujiyoshi, Y]]
+
[[Category: Fujiyoshi Y]]
-
[[Category: Miyazawa, A]]
+
[[Category: Miyazawa A]]
-
[[Category: Unwin, N]]
+
[[Category: Unwin N]]
-
[[Category: Acetylcholine receptor]]
+
-
[[Category: Ion channel]]
+
-
[[Category: Ion channel-receptor complex]]
+
-
[[Category: Ion channel/receptor]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Tubular crystal]]
+

Current revision

STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES

1oed, resolution 4.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools