2gok

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:28, 14 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gok.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of the imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution==
-
|PDB= 2gok |SIZE=350|CAPTION= <scene name='initialview01'>2gok</scene>, resolution 1.87&Aring;
+
<StructureSection load='2gok' size='340' side='right'caption='[[2gok]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
+
<table><tr><td colspan='2'>[[2gok]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GOK FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Imidazolonepropionase Imidazolonepropionase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.7 3.5.2.7] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
-
|GENE= hutI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 Agrobacterium tumefaciens])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01317 DHOase_IIa], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01296 Imidazolone-5PH]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gok OCA], [https://pdbe.org/2gok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gok RCSB], [https://www.ebi.ac.uk/pdbsum/2gok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gok ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2gok TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gok OCA], [http://www.ebi.ac.uk/pdbsum/2gok PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2gok RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/HUTI_AGRFC HUTI_AGRFC] Catalyzes the hydrolytic cleavage of the carbon-nitrogen bond in imidazolone-5-propanoate to yield N-formimidoyl-L-glutamate. It is the third step in the universal histidine degradation pathway.[HAMAP-Rule:MF_00372]
-
'''Crystal structure of the imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2GOK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOK OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/2gok_consurf.spt"</scriptWhenChecked>
-
[[Category: Agrobacterium tumefaciens]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Imidazolonepropionase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Burley, S K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gok ConSurf].
-
[[Category: Kumaran, D.]]
+
<div style="clear:both"></div>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
__TOC__
-
[[Category: Swaminathan, S.]]
+
</StructureSection>
-
[[Category: Tyagi, R.]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: 9252b]]
+
[[Category: Large Structures]]
-
[[Category: histidine metabolism]]
+
[[Category: Burley SK]]
-
[[Category: imidazolonepropionase]]
+
[[Category: Kumaran D]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Swaminathan S]]
-
[[Category: nysgxrc]]
+
[[Category: Tyagi R]]
-
[[Category: protein structure initiative ii (psi-ii)]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:27:09 2008''
+

Current revision

Crystal structure of the imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution

PDB ID 2gok

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2gok"
Personal tools