This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ho5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:11, 5 January 2022) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ho5.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of Oxidoreductase, Gfo/Idh/MocA family from Streptococcus pneumoniae==
-
|PDB= 2ho5 |SIZE=350|CAPTION= <scene name='initialview01'>2ho5</scene>, resolution 2.56&Aring;
+
<StructureSection load='2ho5' size='340' side='right'caption='[[2ho5]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2ho5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HO5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HO5 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE=
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ho3|2ho3]]</div></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01408 GFO_IDH_MocA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0673 MviM]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ho5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ho5 OCA], [https://pdbe.org/2ho5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ho5 RCSB], [https://www.ebi.ac.uk/pdbsum/2ho5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ho5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ho5 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ho5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ho5 OCA], [http://www.ebi.ac.uk/pdbsum/2ho5 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ho5 RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of Oxidoreductase, Gfo/Idh/MocA family from Streptococcus pneumoniae'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ho/2ho5_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2HO5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HO5 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ho5 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Abdullah, J]]
 +
[[Category: Chang, C]]
 +
[[Category: Hatzos, C]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Gfo/idh/moca family]]
 +
[[Category: Mcsg]]
 +
[[Category: Oxidoreductase]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Streptococcus pneumoniae]]
[[Category: Streptococcus pneumoniae]]
-
[[Category: Abdullah, J.]]
 
-
[[Category: Chang, C.]]
 
-
[[Category: Hatzos, C.]]
 
-
[[Category: Joachimiak, A.]]
 
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
 
-
[[Category: gfo/idh/moca family]]
 
-
[[Category: mcsg]]
 
-
[[Category: midwest center for structural genomic]]
 
-
[[Category: oxidoreductase]]
 
-
[[Category: protein structure initiative]]
 
-
[[Category: psi-2]]
 
-
[[Category: streptococcus pneumoniae]]
 
-
[[Category: structural genomic]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:29:29 2008''
 

Current revision

Crystal structure of Oxidoreductase, Gfo/Idh/MocA family from Streptococcus pneumoniae

PDB ID 2ho5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools