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5cv0

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Crystal structure of N-terminal truncated human B12-chaperone CblD (108-296)

Structural highlights

5cv0 is a 2 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.9Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

MMAD_HUMAN Methylcobalamin deficiency type cblDv1;Methylmalonic acidemia with homocystinuria, type cblD;Vitamin B12-responsive methylmalonic acidemia, type cblDv2. The disease is caused by mutations affecting the gene represented in this entry.

Function

MMAD_HUMAN Involved in cobalamin metabolism.^[1]

Publication Abstract from PubMed

In mammals, B12 (or cobalamin) is an essential cofactor required by methionine synthase and methylmalonyl-CoA mutase. A complex intracellular pathway supports the assimilation of cobalamin into its active cofactor forms and delivery to its target enzymes. The methylmalonic aciduria and homocystinuria type D protein (MMADHC) commonly referred to as CblD is a key chaperone involved in intracellular cobalamin trafficking and mutations in CblD cause methylmalonic aciduria and/or homocystinuria. Herein, we report the first crystal structure of the globular C terminal domain of human CblD, which is sufficient for its interaction with the methylmalonic aciduria and homocystinuria type C protein (MMADHC) or CblC and for supporting the cytoplasmic cobalamin trafficking pathway. CblD contains an alpha+beta fold that is structurally reminiscent of the nitro-FMN reductase superfamily. Two of the closest structural relatives of CblD are CblC, a multifunctional enzyme important for cobalamin trafficking, and the activation domain of methionine synthase. CblD, CblC and the activation domain of methionine synthase share several distinguishing features and together with two recently described corrinoid-dependent reductive dehalogenases, constitute a new subclass within the nitro-FMN reductase superfamily. We demonstrate that CblD enhances oxidation of cob(II)alamin bound to CblC and that disease causing mutations in CblD impair the kinetics of this reaction. The striking structural similarity of CblD to CblC, believed to be contiguous in the cobalamin trafficking pathway, suggests the co-option of molecular mimicry as a strategy for achieving its function.

Structure of Human B12 trafficking protein CblD reveals molecular mimicry and identifies a new subfamily of Nitro-FMN reductases.,Yamada K, Gherasim C, Banerjee R, Koutmos M J Biol Chem. 2015 Sep 13. pii: jbc.M115.682435. PMID:26364851^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Coelho D, Suormala T, Stucki M, Lerner-Ellis JP, Rosenblatt DS, Newbold RF, Baumgartner MR, Fowler B. Gene identification for the cblD defect of vitamin B12 metabolism. N Engl J Med. 2008 Apr 3;358(14):1454-64. doi: 10.1056/NEJMoa072200. PMID:18385497 doi:http://dx.doi.org/10.1056/NEJMoa072200
↑ Yamada K, Gherasim C, Banerjee R, Koutmos M. Structure of Human B12 trafficking protein CblD reveals molecular mimicry and identifies a new subfamily of Nitro-FMN reductases. J Biol Chem. 2015 Sep 13. pii: jbc.M115.682435. PMID:26364851 doi:http://dx.doi.org/10.1074/jbc.M115.682435

1 Structural highlights
2 Disease
3 Function
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5cv0"

@@ Line 1: / Line 1: @@
 ==Crystal structure of N-terminal truncated human B12-chaperone CblD (108-296)==
-<StructureSection load='5cv0' size='340' side='right' caption='[[5cv0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='5cv0' size='340' side='right'caption='[[5cv0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5cv0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CV0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CV0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5cv0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CV0 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cuz|5cuz]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cv0 OCA], [http://pdbe.org/5cv0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cv0 RCSB], [http://www.ebi.ac.uk/pdbsum/5cv0 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cv0 OCA], [https://pdbe.org/5cv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cv0 RCSB], [https://www.ebi.ac.uk/pdbsum/5cv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cv0 ProSAT]</span></td></tr>
 </table>
 == Disease ==
-[[http://www.uniprot.org/uniprot/MMAD_HUMAN MMAD_HUMAN]] Methylcobalamin deficiency type cblDv1;Methylmalonic acidemia with homocystinuria, type cblD;Vitamin B12-responsive methylmalonic acidemia, type cblDv2. The disease is caused by mutations affecting the gene represented in this entry.
+[https://www.uniprot.org/uniprot/MMAD_HUMAN MMAD_HUMAN] Methylcobalamin deficiency type cblDv1;Methylmalonic acidemia with homocystinuria, type cblD;Vitamin B12-responsive methylmalonic acidemia, type cblDv2. The disease is caused by mutations affecting the gene represented in this entry.
 == Function ==
-[[http://www.uniprot.org/uniprot/MMAD_HUMAN MMAD_HUMAN]] Involved in cobalamin metabolism.<ref>PMID:18385497</ref>
+[https://www.uniprot.org/uniprot/MMAD_HUMAN MMAD_HUMAN] Involved in cobalamin metabolism.<ref>PMID:18385497</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 24: @@
 __TOC__
 </StructureSection>
-[[Category: Banerjee, R]]
+[[Category: Homo sapiens]]
-[[Category: Gherasim, C]]
+[[Category: Large Structures]]
-[[Category: Koutmos, M]]
+[[Category: Banerjee R]]
-[[Category: Yamada, K]]
+[[Category: Gherasim C]]
-[[Category: Nitro-fmn-reductase]]
+[[Category: Koutmos M]]
-[[Category: Oxidoreductase]]
+[[Category: Yamada K]]
-[[Category: Vitamin b12]]

5cv0

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Current revision

Crystal structure of N-terminal truncated human B12-chaperone CblD (108-296)

Structural highlights

Disease

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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