This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i10

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:26, 24 March 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i10.gif|left|200px]]
 
-
{{Structure
+
==Putative TetR transcriptional regulator from Rhodococcus sp. RHA1==
-
|PDB= 2i10 |SIZE=350|CAPTION= <scene name='initialview01'>2i10</scene>, resolution 2.05&Aring;
+
<StructureSection load='2i10' size='340' side='right'caption='[[2i10]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NPO:P-NITROPHENOL'>NPO</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>
+
<table><tr><td colspan='2'>[[2i10]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I10 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I10 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NPO:P-NITROPHENOL'>NPO</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
|GENE= RHA1_ro09068 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1831 Rhodococcus sp.])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1309 AcrR], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00440 TetR_N]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHA1_ro09068 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 RHOJR])</td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i10 OCA], [http://www.ebi.ac.uk/pdbsum/2i10 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2i10 RCSB]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i10 OCA], [https://pdbe.org/2i10 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i10 RCSB], [https://www.ebi.ac.uk/pdbsum/2i10 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i10 ProSAT], [https://www.topsan.org/Proteins/MCSG/2i10 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
'''Putative TetR transcriptional regulator from Rhodococcus sp. RHA1'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i1/2i10_consurf.spt"</scriptWhenChecked>
-
2I10 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I10 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein complex]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Rhodococcus sp.]]
+
</jmolCheckbox>
-
[[Category: Edwards, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i10 ConSurf].
-
[[Category: Evdokimova, E.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Kudritska, M.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Rhojr]]
-
[[Category: Savchenko, A.]]
+
[[Category: Edwards, A]]
-
[[Category: apc5890]]
+
[[Category: Evdokimova, E]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Kudritska, M]]
-
[[Category: protein structure initiative]]
+
[[Category: Structural genomic]]
-
[[Category: psi-2]]
+
[[Category: Osipiuk, J]]
-
[[Category: structural genomic]]
+
[[Category: Savchenko, A]]
-
[[Category: tetr family]]
+
[[Category: Apc5890]]
-
 
+
[[Category: Mcsg]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:30:27 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Tetr family]]
 +
[[Category: Transcription]]

Current revision

Putative TetR transcriptional regulator from Rhodococcus sp. RHA1

PDB ID 2i10

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2i10"
Personal tools