This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i45

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:27, 24 March 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i45.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of protein NMB1881 from Neisseria meningitidis==
-
|PDB= 2i45 |SIZE=350|CAPTION= <scene name='initialview01'>2i45</scene>, resolution 2.50&Aring;
+
<StructureSection load='2i45' size='340' side='right'caption='[[2i45]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2i45]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplokokkus_intracellularis_meningitidis"_(sic)_weichselbaum_1887 "diplokokkus intracellularis meningitidis" (sic) weichselbaum 1887]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I45 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= NMB1881 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=487 Neisseria meningitidis])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB1881 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=487 "Diplokokkus intracellularis meningitidis" (sic) Weichselbaum 1887])</td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0662 {ManC}]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i45 OCA], [https://pdbe.org/2i45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i45 RCSB], [https://www.ebi.ac.uk/pdbsum/2i45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i45 ProSAT], [https://www.topsan.org/Proteins/MCSG/2i45 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i45 OCA], [http://www.ebi.ac.uk/pdbsum/2i45 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2i45 RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of protein NMB1881 from Neisseria meningitidis'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/2i45_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2I45 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I45 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Neisseria meningitidis]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i45 ConSurf].
-
[[Category: Bargassa, M.]]
+
<div style="clear:both"></div>
-
[[Category: Chang, C.]]
+
__TOC__
-
[[Category: Hatzos, C.]]
+
</StructureSection>
-
[[Category: Joachimiak, A.]]
+
[[Category: Large Structures]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Bargassa, M]]
-
[[Category: mcsg]]
+
[[Category: Chang, C]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Hatzos, C]]
-
[[Category: neisseria meningitidis cupin domain]]
+
[[Category: Joachimiak, A]]
-
[[Category: protein structure initiative]]
+
[[Category: Structural genomic]]
-
[[Category: psi-2]]
+
[[Category: Mcsg]]
-
[[Category: structural genomic]]
+
[[Category: Neisseria meningitidis cupin domain]]
-
 
+
[[Category: PSI, Protein structure initiative]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:30:45 2008''
+
[[Category: Unknown function]]

Current revision

Crystal structure of protein NMB1881 from Neisseria meningitidis

PDB ID 2i45

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools