2icu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 30 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2icu.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Hypothetical Protein YedK From Escherichia coli==
-
|PDB= 2icu |SIZE=350|CAPTION= <scene name='initialview01'>2icu</scene>, resolution 1.60&Aring;
+
<StructureSection load='2icu' size='340' side='right'caption='[[2icu]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2icu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICU FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= yedK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK09951 PRK09951]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2icu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icu OCA], [https://pdbe.org/2icu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2icu RCSB], [https://www.ebi.ac.uk/pdbsum/2icu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2icu ProSAT], [https://www.topsan.org/Proteins/SECSG/2icu TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2icu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icu OCA], [http://www.ebi.ac.uk/pdbsum/2icu PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2icu RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/YEDK_ECOLI YEDK_ECOLI]
-
'''Crystal Structure of Hypothetical Protein YedK From Escherichia coli'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2ICU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICU OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2icu_consurf.spt"</scriptWhenChecked>
-
[[Category: Escherichia coli]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Chen, L.]]
+
</jmolCheckbox>
-
[[Category: Ebihara, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2icu ConSurf].
-
[[Category: Initiative, Riken Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Li, Y.]]
+
__TOC__
-
[[Category: Liu, Z J.]]
+
</StructureSection>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Rose, J.]]
+
[[Category: Large Structures]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Chen L]]
-
[[Category: Wang, B C.]]
+
[[Category: Ebihara A]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Li Y]]
-
[[Category: Zhao, M.]]
+
[[Category: Liu ZJ]]
-
[[Category: hypothetical protein yedk]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Rose J]]
-
[[Category: psi]]
+
[[Category: Wang BC]]
-
[[Category: riken]]
+
[[Category: Yokoyama S]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Zhao M]]
-
[[Category: rsgi]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomic]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:31:42 2008''
+

Current revision

Crystal Structure of Hypothetical Protein YedK From Escherichia coli

PDB ID 2icu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2icu"
Personal tools