5di0

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'''Unreleased structure'''
 
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The entry 5di0 is ON HOLD until Paper Publication
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==Crystal structure of Dln1==
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<StructureSection load='5di0' size='340' side='right'caption='[[5di0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5di0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DI0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DI0 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5di0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5di0 OCA], [https://pdbe.org/5di0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5di0 RCSB], [https://www.ebi.ac.uk/pdbsum/5di0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5di0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AEP1_DANRE AEP1_DANRE] Pore-forming protein which might play a role in host defense. Exists as an antiparallel dimer in solution. Can also assemble into an octameric pore-like structure spanning the cell membrane. Oligomerization may be triggered by binding of the jacalin-type lectin domain to high-mannose cell-surface proteoglycans, and also requires a low pH environment. In vitro, shows high binding affinity for S.cerevisiae mannan and human HIV virus glycoprotein gp120.<ref>PMID:26711430</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Various aerolysin-like pore-forming proteins have been identified from bacteria to vertebrates. However, the mechanism of receptor recognition and/or pore formation of the eukaryotic members remains unknown. Here, we present the first crystal and electron microscopy structures of a vertebrate aerolysin-like protein from Danio rerio, termed Dln1, before and after pore formation. Each subunit of Dln1 dimer comprises a beta-prism lectin module followed by an aerolysin module. Specific binding of the lectin module toward high-mannose glycans triggers drastic conformational changes of the aerolysin module in a pH-dependent manner, ultimately resulting in the formation of a membrane-bound octameric pore. Structural analyses combined with computational simulations and biochemical assays suggest a pore-forming process with an activation mechanism distinct from the previously characterized bacterial members. Moreover, Dln1 and its homologs are ubiquitously distributed in bony fishes and lamprey, suggesting a novel fish-specific defense molecule.
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Authors: Jia, N., Jiang, Y.L., Cheng, W., Wang, H.W., Zhou, C.Z., Chen, Y.
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Structural basis for receptor recognition and pore formation of a zebrafish aerolysin-like protein.,Jia N, Liu N, Cheng W, Jiang YL, Sun H, Chen LL, Peng J, Zhang Y, Ding YH, Zhang ZH, Wang X, Cai G, Wang J, Dong MQ, Zhang Z, Wu H, Wang HW, Chen Y, Zhou CZ EMBO Rep. 2015 Dec 28. pii: e201540851. PMID:26711430<ref>PMID:26711430</ref>
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Description: Crystal structure of Dln1
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Chen, Y]]
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<div class="pdbe-citations 5di0" style="background-color:#fffaf0;"></div>
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[[Category: Wang, H.W]]
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== References ==
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[[Category: Zhou, C.Z]]
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<references/>
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[[Category: Jia, N]]
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__TOC__
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[[Category: Jiang, Y.L]]
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</StructureSection>
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[[Category: Cheng, W]]
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[[Category: Danio rerio]]
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[[Category: Large Structures]]
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[[Category: Chen Y]]
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[[Category: Cheng W]]
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[[Category: Jia N]]
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[[Category: Jiang YL]]
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[[Category: Wang HW]]
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[[Category: Zhou CZ]]

Current revision

Crystal structure of Dln1

PDB ID 5di0

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