This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jpc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:10, 20 December 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2jpc.jpg|left|200px]]
 
-
{{Structure
+
==SSRB DNA Binding Protein==
-
|PDB= 2jpc |SIZE=350|CAPTION= <scene name='initialview01'>2jpc</scene>
+
<StructureSection load='2jpc' size='340' side='right'caption='[[2jpc]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2jpc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JPC FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= ssrB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=602 Salmonella typhimurium])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jpc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpc OCA], [https://pdbe.org/2jpc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jpc RCSB], [https://www.ebi.ac.uk/pdbsum/2jpc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpc ProSAT]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00421 HTH_LUXR]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpc OCA], [http://www.ebi.ac.uk/pdbsum/2jpc PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2jpc RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/O54305_SALTM O54305_SALTM]
-
 
+
== Evolutionary Conservation ==
-
'''SSRB DNA Binding Protein'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jp/2jpc_consurf.spt"</scriptWhenChecked>
-
2JPC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPC OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Salmonella typhimurium]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: ISFI, Integrated Center for Structure and Function Innovation.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jpc ConSurf].
-
[[Category: Kenney, L.]]
+
<div style="clear:both"></div>
-
[[Category: Liao, X.]]
+
__TOC__
-
[[Category: Sheng, W.]]
+
</StructureSection>
-
[[Category: dna binding protein]]
+
[[Category: Large Structures]]
-
[[Category: integrated center for structure and function innovation]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: isfi]]
+
[[Category: Kenney L]]
-
[[Category: protein structure initiative]]
+
[[Category: Liao X]]
-
[[Category: psi-2]]
+
[[Category: Sheng W]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:33:21 2008''
+

Current revision

SSRB DNA Binding Protein

PDB ID 2jpc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools