2o34

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:22, 6 November 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2o34.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375==
-
|PDB= 2o34 |SIZE=350|CAPTION= <scene name='initialview01'>2o34</scene>, resolution 1.95&Aring;
+
<StructureSection load='2o34' size='340' side='right'caption='[[2o34]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O34 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK04334 PRK04334]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o34 OCA], [https://pdbe.org/2o34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o34 RCSB], [https://www.ebi.ac.uk/pdbsum/2o34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o34 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o34 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o34 OCA], [http://www.ebi.ac.uk/pdbsum/2o34 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2o34 RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o3/2o34_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
2O34 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O34 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Desulfovibrio vulgaris]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o34 ConSurf].
-
[[Category: Adams, J M.]]
+
<div style="clear:both"></div>
-
[[Category: Almo, S C.]]
+
__TOC__
-
[[Category: Atwell, S.]]
+
</StructureSection>
-
[[Category: Bain, K T.]]
+
[[Category: Large Structures]]
-
[[Category: Boice, A.]]
+
[[Category: Adams JM]]
-
[[Category: Burley, S K.]]
+
[[Category: Almo SC]]
-
[[Category: Dickey, M.]]
+
[[Category: Atwell S]]
-
[[Category: Emtage, S.]]
+
[[Category: Bain KT]]
-
[[Category: Gheyi, T.]]
+
[[Category: Boice A]]
-
[[Category: Groshong, C.]]
+
[[Category: Burley SK]]
-
[[Category: Malashkevich, V N.]]
+
[[Category: Dickey M]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Emtage S]]
-
[[Category: Ozyurt, S.]]
+
[[Category: Gheyi T]]
-
[[Category: Powell, A.]]
+
[[Category: Groshong C]]
-
[[Category: Reyes, C.]]
+
[[Category: Malashkevich VN]]
-
[[Category: Rooney, I.]]
+
[[Category: Ozyurt S]]
-
[[Category: Rutter, M E.]]
+
[[Category: Powell A]]
-
[[Category: Sauder, J M.]]
+
[[Category: Reyes C]]
-
[[Category: Schwinn, K D.]]
+
[[Category: Rooney I]]
-
[[Category: Thompson, D A.]]
+
[[Category: Rutter ME]]
-
[[Category: Toro, R.]]
+
[[Category: Sauder JM]]
-
[[Category: Wasserman, S R.]]
+
[[Category: Schwinn KD]]
-
[[Category: hypothetical protein]]
+
[[Category: Thompson DA]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Toro R]]
-
[[Category: nysgxrc]]
+
[[Category: Wasserman SR]]
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:35:42 2008''
+

Current revision

Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375

PDB ID 2o34

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools