2od0
From Proteopedia
(Difference between revisions)
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2od0.gif|left|200px]] | ||
| - | + | ==The crystal structure of gene product VP1028 from Vibrio parahaemolyticus== | |
| - | + | <StructureSection load='2od0' size='340' side='right'caption='[[2od0]], [[Resolution|resolution]] 1.95Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2od0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OD0 FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2od0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2od0 OCA], [https://pdbe.org/2od0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2od0 RCSB], [https://www.ebi.ac.uk/pdbsum/2od0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2od0 ProSAT], [https://www.topsan.org/Proteins/MCSG/2od0 TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q87QX1_VIBPA Q87QX1_VIBPA] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/2od0_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| - | [[Category: Vibrio parahaemolyticus]] | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Joachimiak | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2od0 ConSurf]. | |
| - | [[Category: Moy | + | <div style="clear:both"></div> |
| - | [[Category: Zhang | + | __TOC__ |
| - | [[Category: Zhou | + | </StructureSection> |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Vibrio parahaemolyticus RIMD 2210633]] | |
| - | + | [[Category: Joachimiak A]] | |
| - | + | [[Category: Moy S]] | |
| - | + | [[Category: Zhang R]] | |
| - | + | [[Category: Zhou M]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
The crystal structure of gene product VP1028 from Vibrio parahaemolyticus
| |||||||||||
