2odf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:17, 28 December 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2odf.gif|left|200px]]
 
-
{{Structure
+
==The crystal structure of gene product Atu2144 from Agrobacterium tumefaciens==
-
|PDB= 2odf |SIZE=350|CAPTION= <scene name='initialview01'>2odf</scene>, resolution 1.90&Aring;
+
<StructureSection load='2odf' size='340' side='right'caption='[[2odf]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2odf]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ODF FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3931 COG3931]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2odf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odf OCA], [https://pdbe.org/2odf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2odf RCSB], [https://www.ebi.ac.uk/pdbsum/2odf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2odf ProSAT], [https://www.topsan.org/Proteins/MCSG/2odf TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2odf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odf OCA], [http://www.ebi.ac.uk/pdbsum/2odf PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2odf RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A9CI91_AGRFC A9CI91_AGRFC]
-
'''The crystal structure of gene product Atu2144 from Agrobacterium tumefaciens'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2ODF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODF OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/2odf_consurf.spt"</scriptWhenChecked>
-
[[Category: Agrobacterium tumefaciens]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2odf ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Savchenko, A.]]
+
__TOC__
-
[[Category: Xu, X.]]
+
</StructureSection>
-
[[Category: Zhang, R.]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Zheng, H.]]
+
[[Category: Large Structures]]
-
[[Category: agrobacterium tumefacien]]
+
[[Category: Edwards A]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Savchenko A]]
-
[[Category: protein structure initiative]]
+
[[Category: Xu X]]
-
[[Category: psi-2]]
+
[[Category: Zhang R]]
-
[[Category: structural genomic]]
+
[[Category: Zheng H]]
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:36:22 2008''
+

Current revision

The crystal structure of gene product Atu2144 from Agrobacterium tumefaciens

PDB ID 2odf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools