This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oka

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:41, 30 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oka.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of Q9HYQ7_PSEAE from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium target PaR82==
-
|PDB= 2oka |SIZE=350|CAPTION= <scene name='initialview01'>2oka</scene>, resolution 2.500&Aring;
+
<StructureSection load='2oka' size='340' side='right'caption='[[2oka]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2oka]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OKA FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
|GENE= PA3338 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oka OCA], [https://pdbe.org/2oka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oka RCSB], [https://www.ebi.ac.uk/pdbsum/2oka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oka ProSAT], [https://www.topsan.org/Proteins/NESGC/2oka TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05169 Seleno_W_rel]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oka OCA], [http://www.ebi.ac.uk/pdbsum/2oka PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2oka RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9HYQ7_PSEAE Q9HYQ7_PSEAE]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of Q9HYQ7_PSEAE from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium target PaR82'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2oka_consurf.spt"</scriptWhenChecked>
-
2OKA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKA OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oka ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Single protein]]
+
[[Category: Acton TB]]
-
[[Category: Acton, T B.]]
+
[[Category: Baran MC]]
-
[[Category: Baran, M C.]]
+
[[Category: Benach J]]
-
[[Category: Benach, J.]]
+
[[Category: Chen XC]]
-
[[Category: Chen, X C.]]
+
[[Category: Cunningham K]]
-
[[Category: Cunningham, K.]]
+
[[Category: Fang Y]]
-
[[Category: Fang, Y.]]
+
[[Category: Hunt JF]]
-
[[Category: Hunt, J F.]]
+
[[Category: Liu J]]
-
[[Category: Liu, J.]]
+
[[Category: Ma LC]]
-
[[Category: Ma, L C.]]
+
[[Category: Montelione GT]]
-
[[Category: Montelione, G T.]]
+
[[Category: Neely H]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Owens L]]
-
[[Category: Neely, H.]]
+
[[Category: Rost B]]
-
[[Category: Owens, L.]]
+
[[Category: Seetharaman J]]
-
[[Category: Rost, B.]]
+
[[Category: Tong L]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Xiao R]]
-
[[Category: Tong, L.]]
+
-
[[Category: Xiao, R.]]
+
-
[[Category: nesg]]
+
-
[[Category: northeast structural genomics consortium]]
+
-
[[Category: par82]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:36:47 2008''
+

Current revision

Crystal structure of Q9HYQ7_PSEAE from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium target PaR82

PDB ID 2oka

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2oka"
Personal tools