2oyn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:06, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oyn.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120==
-
|PDB= 2oyn |SIZE=350|CAPTION= <scene name='initialview01'>2oyn</scene>, resolution 1.850&Aring;
+
<StructureSection load='2oyn' size='340' side='right'caption='[[2oyn]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CDP:CYTIDINE-5&#39;-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[2oyn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYN FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
|GENE= MJ0056 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 Methanocaldococcus jannaschii])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01982 DUF120]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyn OCA], [https://pdbe.org/2oyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyn RCSB], [https://www.ebi.ac.uk/pdbsum/2oyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyn ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oyn TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyn OCA], [http://www.ebi.ac.uk/pdbsum/2oyn PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2oyn RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/RIFK_METJA RIFK_METJA] Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN). Can also utilize UTP as the phosphate donor, although less efficiently, and it is unclear if ATP and GTP can also serve as substrates (PubMed:18245297) or not (PubMed:18073108).<ref>PMID:18073108</ref> <ref>PMID:18245297</ref>
-
'''Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2OYN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYN OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyn_consurf.spt"</scriptWhenChecked>
-
[[Category: Methanocaldococcus jannaschii]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Almo, S C.]]
+
</jmolCheckbox>
-
[[Category: Bain, K T.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyn ConSurf].
-
[[Category: Bonanno, J B.]]
+
<div style="clear:both"></div>
-
[[Category: Burley, S K.]]
+
== References ==
-
[[Category: Dickey, M.]]
+
<references/>
-
[[Category: Lau, C.]]
+
__TOC__
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
</StructureSection>
-
[[Category: Romero, R.]]
+
[[Category: Large Structures]]
-
[[Category: Sauder, M J.]]
+
[[Category: Methanocaldococcus jannaschii DSM 2661]]
-
[[Category: Smith, D.]]
+
[[Category: Almo SC]]
-
[[Category: Wasserman, S.]]
+
[[Category: Bain KT]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Bonanno JB]]
-
[[Category: nysgxrc]]
+
[[Category: Burley SK]]
-
[[Category: protein structure initiative]]
+
[[Category: Dickey M]]
-
[[Category: psi-2]]
+
[[Category: Lau C]]
-
[[Category: structural genomic]]
+
[[Category: Romero R]]
-
[[Category: unknown function]]
+
[[Category: Sauder JM]]
-
 
+
[[Category: Smith D]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:37:39 2008''
+
[[Category: Wasserman S]]

Current revision

Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120

PDB ID 2oyn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2oyn"
Personal tools