5ady

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:39, 9 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5ady is ON HOLD until Paper Publication
+
==Cryo-EM structures of the 50S ribosome subunit bound with HflX==
 +
<SX load='5ady' size='340' side='right' viewer='molstar' caption='[[5ady]], [[Resolution|resolution]] 4.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5ady]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ADY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ADY FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.5&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ady FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ady OCA], [https://pdbe.org/5ady PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ady RCSB], [https://www.ebi.ac.uk/pdbsum/5ady PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ady ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RL32_ECOLI RL32_ECOLI]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Adverse cellular conditions often lead to nonproductive translational stalling and arrest of ribosomes on mRNAs. Here, we used fast kinetics and cryo-EM to characterize Escherichia coli HflX, a GTPase with unknown function. Our data reveal that HflX is a heat shock-induced ribosome-splitting factor capable of dissociating vacant as well as mRNA-associated ribosomes with deacylated tRNA in the peptidyl site. Structural data demonstrate that the N-terminal effector domain of HflX binds to the peptidyl transferase center in a strikingly similar manner as that of the class I release factors and induces dramatic conformational changes in central intersubunit bridges, thus promoting subunit dissociation. Accordingly, loss of HflX results in an increase in stalled ribosomes upon heat shock. These results suggest a primary role of HflX in rescuing translationally arrested ribosomes under stress conditions.
-
Authors: Zhang, Y., Mandava, C.S., Cao, W., Li, X., Zhang, D., Li, N., Zhang, Y., Zhang, X., Qin, Y., Mi, K., Lei, J., Sanyal, S., Gao, N.
+
HflX is a ribosome-splitting factor rescuing stalled ribosomes under stress conditions.,Zhang Y, Mandava CS, Cao W, Li X, Zhang D, Li N, Zhang Y, Zhang X, Qin Y, Mi K, Lei J, Sanyal S, Gao N Nat Struct Mol Biol. 2015 Oct 12. doi: 10.1038/nsmb.3103. PMID:26458047<ref>PMID:26458047</ref>
-
Description: Cryo-EM structures of the 50S ribosome subunit bound with HflX
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Mi, K]]
+
<div class="pdbe-citations 5ady" style="background-color:#fffaf0;"></div>
-
[[Category: Zhang, X]]
+
 
-
[[Category: Cao, W]]
+
==See Also==
-
[[Category: Zhang, Y]]
+
*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]]
-
[[Category: Gao, N]]
+
*[[Ribosome 3D structures|Ribosome 3D structures]]
-
[[Category: Mandava, C.S]]
+
== References ==
-
[[Category: Qin, Y]]
+
<references/>
-
[[Category: Li, X]]
+
__TOC__
-
[[Category: Zhang, D]]
+
</SX>
-
[[Category: Sanyal, S]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Li, N]]
+
[[Category: Large Structures]]
-
[[Category: Lei, J]]
+
[[Category: Cao W]]
 +
[[Category: Gao N]]
 +
[[Category: Lei J]]
 +
[[Category: Li N]]
 +
[[Category: Li X]]
 +
[[Category: Mandava CS]]
 +
[[Category: Mi K]]
 +
[[Category: Qin Y]]
 +
[[Category: Sanyal S]]
 +
[[Category: Zhang D]]
 +
[[Category: Zhang X]]
 +
[[Category: Zhang Y]]

Current revision

Cryo-EM structures of the 50S ribosome subunit bound with HflX

5ady, resolution 4.50Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools