5ady
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Cryo-EM structures of the 50S ribosome subunit bound with HflX== | |
+ | <SX load='5ady' size='340' side='right' viewer='molstar' caption='[[5ady]], [[Resolution|resolution]] 4.50Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5ady]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ADY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ADY FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.5Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ady FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ady OCA], [https://pdbe.org/5ady PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ady RCSB], [https://www.ebi.ac.uk/pdbsum/5ady PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ady ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/RL32_ECOLI RL32_ECOLI] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Adverse cellular conditions often lead to nonproductive translational stalling and arrest of ribosomes on mRNAs. Here, we used fast kinetics and cryo-EM to characterize Escherichia coli HflX, a GTPase with unknown function. Our data reveal that HflX is a heat shock-induced ribosome-splitting factor capable of dissociating vacant as well as mRNA-associated ribosomes with deacylated tRNA in the peptidyl site. Structural data demonstrate that the N-terminal effector domain of HflX binds to the peptidyl transferase center in a strikingly similar manner as that of the class I release factors and induces dramatic conformational changes in central intersubunit bridges, thus promoting subunit dissociation. Accordingly, loss of HflX results in an increase in stalled ribosomes upon heat shock. These results suggest a primary role of HflX in rescuing translationally arrested ribosomes under stress conditions. | ||
- | + | HflX is a ribosome-splitting factor rescuing stalled ribosomes under stress conditions.,Zhang Y, Mandava CS, Cao W, Li X, Zhang D, Li N, Zhang Y, Zhang X, Qin Y, Mi K, Lei J, Sanyal S, Gao N Nat Struct Mol Biol. 2015 Oct 12. doi: 10.1038/nsmb.3103. PMID:26458047<ref>PMID:26458047</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[ | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 5ady" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: Cao | + | ==See Also== |
- | [[Category: | + | *[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]] |
- | [[Category: | + | *[[Ribosome 3D structures|Ribosome 3D structures]] |
- | [[Category: | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: | + | __TOC__ |
- | [[Category: | + | </SX> |
- | [[Category: Sanyal | + | [[Category: Escherichia coli K-12]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Cao W]] |
+ | [[Category: Gao N]] | ||
+ | [[Category: Lei J]] | ||
+ | [[Category: Li N]] | ||
+ | [[Category: Li X]] | ||
+ | [[Category: Mandava CS]] | ||
+ | [[Category: Mi K]] | ||
+ | [[Category: Qin Y]] | ||
+ | [[Category: Sanyal S]] | ||
+ | [[Category: Zhang D]] | ||
+ | [[Category: Zhang X]] | ||
+ | [[Category: Zhang Y]] |
Current revision
Cryo-EM structures of the 50S ribosome subunit bound with HflX
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Categories: Escherichia coli K-12 | Large Structures | Cao W | Gao N | Lei J | Li N | Li X | Mandava CS | Mi K | Qin Y | Sanyal S | Zhang D | Zhang X | Zhang Y