5dps

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:25, 6 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5dps is ON HOLD until Paper Publication
+
==Crystal structure of PLEKHM1 LIR-fused human GABARAP_2-117==
-
 
+
<StructureSection load='5dps' size='340' side='right'caption='[[5dps]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
Authors: Ravichandran, A.C., Suzuki, H., Dobson, R.C.J.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[5dps]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DPS FirstGlance]. <br>
-
Description: Crystal structure of PLEKHM1 LIR-fused human GABARAP_2-117
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dps OCA], [https://pdbe.org/5dps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dps RCSB], [https://www.ebi.ac.uk/pdbsum/5dps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dps ProSAT]</span></td></tr>
-
[[Category: Ravichandran, A.C]]
+
</table>
-
[[Category: Suzuki, H]]
+
== Disease ==
-
[[Category: Dobson, R.C.J]]
+
[https://www.uniprot.org/uniprot/PKHM1_HUMAN PKHM1_HUMAN] Intermediate osteopetrosis. The disease is caused by mutations affecting the gene represented in this entry.
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PKHM1_HUMAN PKHM1_HUMAN] Proposed to act as a multivalent adapter protein that regulates Rab7-dependent and HOPS complex-dependent fusion events in the endolysosomal system and couples autophagic and the endocytic trafficking pathways. Required for late stages of endolysosomal maturation, facilitating both endocytosis-mediated degradation of growth factor receptors and autophagosome clearance. Seems to be involved in the terminal maturation of autophagosomes and to mediate autophagosome-lysosome fusion (PubMed:25498145). Involved in vesicular transport in the osteoclast (By similarity). May be involved in negative regulation of endocytic transport from early endosome to late endosome/lysosome implicating its association with Rab7 (PubMed:20943950). May have a role in sialyl-lex-mediated transduction of apoptotic signals (PubMed:12820725). In case of infection contributes to Salmonella typhimurium pathogenesis by supporting the integrity of the Salmonella-containing vacuole (SCV) probably in concert with the HOPS complex and Rab7 (PubMed:25500191).[UniProtKB:Q5PQS0]<ref>PMID:12820725</ref> <ref>PMID:20943950</ref> <ref>PMID:25498145</ref> <ref>PMID:25500191</ref> [https://www.uniprot.org/uniprot/GBRAP_HUMAN GBRAP_HUMAN] May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in apoptosis. Involved in autophagy (By similarity).<ref>PMID:15977068</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Dobson RCJ]]
 +
[[Category: Ravichandran AC]]
 +
[[Category: Suzuki H]]

Current revision

Crystal structure of PLEKHM1 LIR-fused human GABARAP_2-117

PDB ID 5dps

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5dps"
Personal tools