5fj9

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(New page: '''Unreleased structure''' The entry 5fj9 is ON HOLD until sometime in the future Authors: Hoffmann, N.A., Jakobi, A.J., Moreno-Morcillo, M., Glatt, S., Kosinski, J., Hagen, W.J., Sachs...)
Current revision (06:53, 19 July 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5fj9 is ON HOLD until sometime in the future
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==Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A==
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<SX load='5fj9' size='340' side='right' viewer='molstar' caption='[[5fj9]], [[Resolution|resolution]] 4.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5fj9]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FJ9 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fj9 OCA], [https://pdbe.org/5fj9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fj9 RCSB], [https://www.ebi.ac.uk/pdbsum/5fj9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fj9 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RPC1_YEAST RPC1_YEAST] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Forms the polymerase active center together with the second largest subunit. A single-stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol III. A bridging helix emanates from RPC1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol III by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Transcription of genes encoding small structured RNAs such as transfer RNAs, spliceosomal U6 small nuclear RNA and ribosomal 5S RNA is carried out by RNA polymerase III (Pol III), the largest yet structurally least characterized eukaryotic RNA polymerase. Here we present the cryo-electron microscopy structures of the Saccharomyces cerevisiae Pol III elongating complex at 3.9 A resolution and the apo Pol III enzyme in two different conformations at 4.6 and 4.7 A resolution, respectively, which allow the building of a 17-subunit atomic model of Pol III. The reconstructions reveal the precise orientation of the C82-C34-C31 heterotrimer in close proximity to the stalk. The C53-C37 heterodimer positions residues involved in transcription termination close to the non-template DNA strand. In the apo Pol III structures, the stalk adopts different orientations coupled with closed and open conformations of the clamp. Our results provide novel insights into Pol III-specific transcription and the adaptation of Pol III towards its small transcriptional targets.
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Authors: Hoffmann, N.A., Jakobi, A.J., Moreno-Morcillo, M., Glatt, S., Kosinski, J., Hagen, W.J., Sachse, C., Muller, C.W.
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Molecular structures of unbound and transcribing RNA polymerase III.,Hoffmann NA, Jakobi AJ, Moreno-Morcillo M, Glatt S, Kosinski J, Hagen WJ, Sachse C, Muller CW Nature. 2015 Nov 25. doi: 10.1038/nature16143. PMID:26605533<ref>PMID:26605533</ref>
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Description: Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Kosinski, J]]
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<div class="pdbe-citations 5fj9" style="background-color:#fffaf0;"></div>
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[[Category: Muller, C.W]]
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[[Category: Hagen, W.J]]
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==See Also==
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[[Category: Hoffmann, N.A]]
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*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
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[[Category: Glatt, S]]
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== References ==
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[[Category: Jakobi, A.J]]
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<references/>
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[[Category: Sachse, C]]
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__TOC__
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[[Category: Moreno-Morcillo, M]]
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</SX>
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[[Category: Large Structures]]
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[[Category: Saccharomyces cerevisiae]]
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[[Category: Glatt S]]
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[[Category: Hagen WJ]]
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[[Category: Hoffmann NA]]
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[[Category: Jakobi AJ]]
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[[Category: Kosinski J]]
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[[Category: Moreno-Morcillo M]]
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[[Category: Muller CW]]
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[[Category: Sachse C]]

Current revision

Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A

5fj9, resolution 4.60Å

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