2r5x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:20, 21 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2r5x.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of uncharacterized conserved protein YugN from Geobacillus kaustophilus HTA426==
-
|PDB= 2r5x |SIZE=350|CAPTION= <scene name='initialview01'>2r5x</scene>, resolution 2.04&Aring;
+
<StructureSection load='2r5x' size='340' side='right'caption='[[2r5x]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2r5x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R5X FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
-
|GENE= yugN, GK1089 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235909 Geobacillus kaustophilus HTA426])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5x OCA], [https://pdbe.org/2r5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r5x RCSB], [https://www.ebi.ac.uk/pdbsum/2r5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r5x ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2r5x TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08868 YugN]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5x OCA], [http://www.ebi.ac.uk/pdbsum/2r5x PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2r5x RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q5L106_GEOKA Q5L106_GEOKA]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of uncharacterized conserved protein YugN from Geobacillus kaustophilus HTA426'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r5x_consurf.spt"</scriptWhenChecked>
-
2R5X is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5X OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Geobacillus kaustophilus hta426]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Almo, S C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r5x ConSurf].
-
[[Category: Burley, S K.]]
+
<div style="clear:both"></div>
-
[[Category: Freeman, J.]]
+
__TOC__
-
[[Category: Groshong, C.]]
+
</StructureSection>
-
[[Category: Koss, J.]]
+
[[Category: Geobacillus kaustophilus HTA426]]
-
[[Category: Meyer, A J.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Almo SC]]
-
[[Category: Patskovsky, Y.]]
+
[[Category: Burley SK]]
-
[[Category: Ramagopal, U A.]]
+
[[Category: Freeman J]]
-
[[Category: Rodgers, L.]]
+
[[Category: Groshong C]]
-
[[Category: Sauder, J M.]]
+
[[Category: Koss J]]
-
[[Category: Shi, W.]]
+
[[Category: Meyer AJ]]
-
[[Category: Toro, R.]]
+
[[Category: Patskovsky Y]]
-
[[Category: Wasserman, S.]]
+
[[Category: Ramagopal UA]]
-
[[Category: Wu, B.]]
+
[[Category: Rodgers L]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Sauder JM]]
-
[[Category: nysgxrc]]
+
[[Category: Shi W]]
-
[[Category: protein structure initiative]]
+
[[Category: Toro R]]
-
[[Category: psi-2]]
+
[[Category: Wasserman S]]
-
[[Category: structural genomic]]
+
[[Category: Wu B]]
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:45:14 2008''
+

Current revision

Crystal structure of uncharacterized conserved protein YugN from Geobacillus kaustophilus HTA426

PDB ID 2r5x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools