2ra8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:24, 21 November 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ra8.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the Q64V53_BACFR protein from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR43==
-
|PDB= 2ra8 |SIZE=350|CAPTION= <scene name='initialview01'>2ra8</scene>, resolution 1.95&Aring;
+
<StructureSection load='2ra8' size='340' side='right'caption='[[2ra8]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CAS:S-(DIMETHYLARSENIC)CYSTEINE'>CAS</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2ra8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_YCH46 Bacteroides fragilis YCH46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RA8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RA8 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
|GENE= BF1877 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 Bacteroides fragilis YCH46])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAS:S-(DIMETHYLARSENIC)CYSTEINE'>CAS</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3831 COG3831]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ra8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ra8 OCA], [https://pdbe.org/2ra8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ra8 RCSB], [https://www.ebi.ac.uk/pdbsum/2ra8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ra8 ProSAT], [https://www.topsan.org/Proteins/NESGC/2ra8 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ra8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ra8 OCA], [http://www.ebi.ac.uk/pdbsum/2ra8 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ra8 RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of the Q64V53_BACFR protein from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR43'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2ra8_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
2RA8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_ych46 Bacteroides fragilis ych46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RA8 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bacteroides fragilis ych46]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ra8 ConSurf].
-
[[Category: Abashidze, M.]]
+
<div style="clear:both"></div>
-
[[Category: Acton, T B.]]
+
__TOC__
-
[[Category: Cunningham, K.]]
+
</StructureSection>
-
[[Category: Hunt, J F.]]
+
[[Category: Bacteroides fragilis YCH46]]
-
[[Category: Maglaqui, M.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Abashidze M]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton TB]]
-
[[Category: Owens, L.]]
+
[[Category: Cunningham K]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Hunt JF]]
-
[[Category: Tong, L.]]
+
[[Category: Maglaqui M]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Montelione GT]]
-
[[Category: Wang, D.]]
+
[[Category: Owens L]]
-
[[Category: Xiao, R.]]
+
[[Category: Seetharaman J]]
-
[[Category: bfr43]]
+
[[Category: Tong L]]
-
[[Category: leucine rich repeat]]
+
[[Category: Vorobiev SM]]
-
[[Category: lrr domain]]
+
[[Category: Wang D]]
-
[[Category: nesg]]
+
[[Category: Xiao R]]
-
[[Category: northeast structural genomics consortium]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: q64v53]]
+
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
[[Category: wgr domain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:45:41 2008''
+

Current revision

Crystal structure of the Q64V53_BACFR protein from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR43

PDB ID 2ra8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ra8"
Personal tools