2rir

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[[Image:2rir.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis==
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|PDB= 2rir |SIZE=350|CAPTION= <scene name='initialview01'>2rir</scene>, resolution 2.790&Aring;
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<StructureSection load='2rir' size='340' side='right'caption='[[2rir]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>
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<table><tr><td colspan='2'>[[2rir]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RIR FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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|GENE= spoVFA, dpaA, BSU16730 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK08306 PRK08306], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK07502 PRK07502]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spoVFA, dpaA, BSU16730 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rir OCA], [http://www.ebi.ac.uk/pdbsum/2rir PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2rir RCSB]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rir OCA], [https://pdbe.org/2rir PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rir RCSB], [https://www.ebi.ac.uk/pdbsum/2rir PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rir ProSAT], [https://www.topsan.org/Proteins/MCSG/2rir TOPSAN]</span></td></tr>
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}}
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</table>
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== Function ==
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'''Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis'''
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[[https://www.uniprot.org/uniprot/DPAA_BACSU DPAA_BACSU]] Together with DpaB, catalyzes the conversion of dihydrodipicolinate to dipicolinate (DPA), which constitutes up to 10% of the dry weight of the spore.<ref>PMID:8345520</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==About this Structure==
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Check<jmol>
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2RIR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIR OCA].
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<jmolCheckbox>
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[[Category: Bacillus subtilis]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/2rir_consurf.spt"</scriptWhenChecked>
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[[Category: Single protein]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Joachimiak, A.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</jmolCheckbox>
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[[Category: Moy, S.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rir ConSurf].
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[[Category: Osipiuk, J.]]
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<div style="clear:both"></div>
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[[Category: Quartey, P.]]
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== References ==
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[[Category: amino-acid biosynthesis]]
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<references/>
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[[Category: apc1343]]
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__TOC__
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[[Category: diaminopimelate biosynthesis]]
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</StructureSection>
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[[Category: dipicolinate synthase]]
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[[Category: Bacillus globigii migula 1900]]
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[[Category: lysine biosynthesis]]
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[[Category: Large Structures]]
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[[Category: mcsg]]
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[[Category: Joachimiak, A]]
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[[Category: midwest center for structural genomic]]
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[[Category: Structural genomic]]
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[[Category: oxidoreductase]]
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[[Category: Moy, S]]
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[[Category: protein structure initiative]]
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[[Category: Osipiuk, J]]
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[[Category: psi-2]]
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[[Category: Quartey, P]]
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[[Category: sporulation]]
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[[Category: Amino-acid biosynthesis]]
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[[Category: structural genomic]]
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[[Category: Apc1343]]
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[[Category: Diaminopimelate biosynthesis]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:46:12 2008''
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[[Category: Dipicolinate synthase]]
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[[Category: Lysine biosynthesis]]
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[[Category: Mcsg]]
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[[Category: Oxidoreductase]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Sporulation]]

Current revision

Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis

PDB ID 2rir

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