2rk5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:22, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rk5.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of a domain of the putative hemolysin from Streptococcus mutans UA159==
-
|PDB= 2rk5 |SIZE=350|CAPTION= <scene name='initialview01'>2rk5</scene>, resolution 1.50&Aring;
+
<StructureSection load='2rk5' size='340' side='right'caption='[[2rk5]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2rk5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans_UA159 Streptococcus mutans UA159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RK5 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= hlyX, SMU_1693 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210007 Streptococcus mutans UA159])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rk5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk5 OCA], [https://pdbe.org/2rk5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rk5 RCSB], [https://www.ebi.ac.uk/pdbsum/2rk5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2rk5 TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03471 CorC_HlyC]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk5 OCA], [http://www.ebi.ac.uk/pdbsum/2rk5 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2rk5 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/O68574_STRMG O68574_STRMG]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of a domain of the putative hemolysin from Streptococcus mutans UA159'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk5_consurf.spt"</scriptWhenChecked>
-
2RK5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans_ua159 Streptococcus mutans ua159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK5 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Streptococcus mutans ua159]]
+
</jmolCheckbox>
-
[[Category: Clancy, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rk5 ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: Li, H.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Zhang, R.]]
+
[[Category: Large Structures]]
-
[[Category: hemolysin]]
+
[[Category: Streptococcus mutans UA159]]
-
[[Category: mcsg]]
+
[[Category: Clancy S]]
-
[[Category: membrane]]
+
[[Category: Joachimiak A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Li H]]
-
[[Category: protein structure initiative]]
+
[[Category: Zhang R]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: toxin]]
+
-
[[Category: transmembrane]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:46:20 2008''
+

Current revision

Crystal structure of a domain of the putative hemolysin from Streptococcus mutans UA159

PDB ID 2rk5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools