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| ==Cu/Zn superoxide dismutase from Brucella abortus== | | ==Cu/Zn superoxide dismutase from Brucella abortus== |
- | <StructureSection load='4l05' size='340' side='right' caption='[[4l05]], [[Resolution|resolution]] 1.10Å' scene=''> | + | <StructureSection load='4l05' size='340' side='right'caption='[[4l05]], [[Resolution|resolution]] 1.10Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4l05]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_of_abortion"_bang_1897 "bacillus of abortion" bang 1897]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2aqm 2aqm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L05 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L05 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4l05]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_abortus Brucella abortus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2aqm 2aqm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L05 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L05 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.098Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2aqn|2aqn]], [[2aqp|2aqp]], [[2aqq|2aqq]], [[2aqr|2aqr]], [[2aqs|2aqs]], [[2aqt|2aqt]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sodC, BruAb2_0527 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235 "Bacillus of abortion" Bang 1897])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l05 OCA], [https://pdbe.org/4l05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l05 RCSB], [https://www.ebi.ac.uk/pdbsum/4l05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l05 ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4l05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l05 OCA], [http://pdbe.org/4l05 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4l05 RCSB], [http://www.ebi.ac.uk/pdbsum/4l05 PDBsum]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/SODC_BRUAB SODC_BRUAB]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems. | + | [https://www.uniprot.org/uniprot/SODC_BRUAB SODC_BRUAB] Destroys radicals which are normally produced within the cells and which are toxic to biological systems. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 4l05" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4l05" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus of abortion bang 1897]] | |
- | [[Category: Superoxide dismutase]] | |
- | [[Category: Belzer, C A]] | |
- | [[Category: Bruns, C K]] | |
- | [[Category: Cabelli, D E]] | |
- | [[Category: Didonato, M]] | |
- | [[Category: Getzoff, E D]] | |
- | [[Category: Kroll, J S]] | |
- | [[Category: Pratt, A J]] | |
- | [[Category: Shin, D S]] | |
- | [[Category: Tabatabai, L B]] | |
- | [[Category: Tainer, J A]] | |
| [[Category: Brucella abortus]] | | [[Category: Brucella abortus]] |
- | [[Category: Oxidoreductase]] | + | [[Category: Large Structures]] |
| + | [[Category: Belzer CA]] |
| + | [[Category: Bruns CK]] |
| + | [[Category: Cabelli DE]] |
| + | [[Category: Didonato M]] |
| + | [[Category: Getzoff ED]] |
| + | [[Category: Kroll JS]] |
| + | [[Category: Pratt AJ]] |
| + | [[Category: Shin DS]] |
| + | [[Category: Tabatabai LB]] |
| + | [[Category: Tainer JA]] |
| Structural highlights
4l05 is a 1 chain structure with sequence from Brucella abortus. This structure supersedes the now removed PDB entry 2aqm. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 1.098Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
SODC_BRUAB Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Publication Abstract from PubMed
Bacterial pathogens Neisseria meningitidis and Brucella abortus pose threats to human and animal health worldwide, causing meningococcal disease and brucellosis, respectively. Mortality from acute N. meningitidis infections remains high despite antibiotics, and brucellosis presents alimentary and health consequences. Superoxide dismutases are master regulators of reactive oxygen and general pathogenicity factors and are therefore therapeutic targets. Cu,Zn superoxide dismutases (SODs) localized to the periplasm promote survival by detoxifying superoxide radicals generated by major host antimicrobial immune responses. We discovered that passive immunization with an antibody directed at N. meningitidis SOD (NmSOD) was protective in a mouse infection model. To define the relevant atomic details and solution assembly states of this important virulence factor, we report high-resolution and X-ray scattering analyses of NmSOD and of SOD from B. abortus (BaSOD). The NmSOD structures revealed an auxiliary tetrahedral Cu-binding site bridging the dimer interface; mutational analyses suggested that this metal site contributes to protein stability, with implications for bacterial defense mechanisms. Biochemical and structural analyses informed us about electrostatic substrate guidance, dimer assembly, and an exposed C-terminal epitope in the NmSOD dimer. In contrast, the monomeric BaSOD structure provided insights for extending immunogenic peptide epitopes derived from the protein. These collective results reveal unique contributions of SOD to pathogenic virulence, refine predictive motifs for distinguishing SOD classes, and suggest general targets for antibacterial immune responses. The identified functional contributions, motifs, and targets distinguishing bacterial and eukaryotic SOD assemblies presented here provide a foundation for efforts to develop SOD-specific inhibitors of or vaccines against these harmful pathogens. IMPORTANCE: By protecting microbes against reactive oxygen insults, SODs aid survival of many bacteria within their hosts. Despite the ubiquity and conservation of these key enzymes, notable species-specific differences relevant to pathogenesis remain undefined. To probe mechanisms that govern the functioning of Neisseria meningitidis and Brucella abortus SODs, we used X-ray structures, enzymology, modeling, and murine infection experiments. We identified virulence determinants common to the two homologs, assembly differences, and a unique metal reservoir within meningococcal SOD that stabilizes the enzyme and may provide a safeguard against copper toxicity. The insights reported here provide a rationale and a basis for SOD-specific drug design and an extension of immunogen design to target two important pathogens that continue to pose global health threats.
Structural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus.,Pratt AJ, DiDonato M, Shin DS, Cabelli DE, Bruns CK, Belzer CA, Gorringe AR, Langford PR, Tabatabai LB, Kroll JS, Tainer JA, Getzoff ED J Bacteriol. 2015 Dec 15;197(24):3834-47. doi: 10.1128/JB.00343-15. Epub 2015 Oct, 12. PMID:26459556[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Pratt AJ, DiDonato M, Shin DS, Cabelli DE, Bruns CK, Belzer CA, Gorringe AR, Langford PR, Tabatabai LB, Kroll JS, Tainer JA, Getzoff ED. Structural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus. J Bacteriol. 2015 Dec 15;197(24):3834-47. doi: 10.1128/JB.00343-15. Epub 2015 Oct, 12. PMID:26459556 doi:http://dx.doi.org/10.1128/JB.00343-15
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